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GCNT4 glucosaminyl (N-acetyl) transferase 4 [ Homo sapiens (human) ]

Gene ID: 51301, updated on 17-Jun-2019

Summary

Official Symbol
GCNT4provided by HGNC
Official Full Name
glucosaminyl (N-acetyl) transferase 4provided by HGNC
Primary source
HGNC:HGNC:17973
See related
Ensembl:ENSG00000176928 MIM:616782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2GNT3; LINC01336
Orthologs

Genomic context

See GCNT4 in Genome Data Viewer
Location:
5q13.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (75016979..75055413, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (74323246..74350743, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379040 Neighboring gene ribosomal protein L27a pseudogene 5 Neighboring gene ankyrin repeat domain 31 Neighboring gene SUMO2 pseudogene 5 Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase

Genomic regions, transcripts, and products

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
NHGRI GWA Catalog

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
O-glycan processing TAS
Traceable Author Statement
more info
 
carbohydrate metabolic process TAS
Traceable Author Statement
more info
PubMed 
homeostasis of number of cells IEA
Inferred from Electronic Annotation
more info
 
inter-male aggressive behavior IEA
Inferred from Electronic Annotation
more info
 
kidney morphogenesis IEA
Inferred from Electronic Annotation
more info
 
protein O-linked glycosylation TAS
Traceable Author Statement
more info
PubMed 
thyroid hormone metabolic process IEA
Inferred from Electronic Annotation
more info
 
tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi membrane TAS
Traceable Author Statement
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
Names
core 2 beta-1,6-N-acetylglucosaminyltransferase 3
core 2-branching enzyme 3
core2-GlcNAc-transferase 3
glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
long intergenic non-protein coding RNA 1336
NP_001353666.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001366737.1NP_001353666.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Status: VALIDATED

    Source sequence(s)
    AC093259
    Consensus CDS
    CCDS4026.1
    Conserved Domains (1) summary
    cl27418
    Location:133402
    Branch; Core-2/I-Branching enzyme

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    75016979..75055413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_016591.2: Suppressed sequence

    Description
    NM_016591.2: This RefSeq was removed because currently there is insufficient support for the transcript.
  2. NR_126375.1: Suppressed sequence

    Description
    NR_126375.1: This RefSeq was removed because currently there is insufficient support for the transcript.
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