U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBE3B ubiquitin protein ligase E3B [ Bos taurus (domestic cattle) ]

Gene ID: 512750, updated on 4-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
UBE3Bprovided by VGNC
Official Full Name
ubiquitin protein ligase E3Bprovided by VGNC
Primary source
VGNC:VGNC:36600
See related
BGD:BT18497; Ensembl:ENSBTAG00000002698
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See UBE3B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (63650234..63696686, complement)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene mevalonate kinase Neighboring gene metabolism of cobalamin associated B Neighboring gene potassium channel tetramerization domain containing 10 Neighboring gene myosin IH Neighboring gene forkhead box N4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin-protein ligase E3B
NP_001193161.1
XP_005217865.1
XP_005217866.1
XP_010812210.1
XP_010812212.1
XP_015330950.1
XP_024832956.1
XP_024832957.1
XP_059731948.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206232.3 → NP_001193161.1  ubiquitin-protein ligase E3B

    See identical proteins and their annotated locations for NP_001193161.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000017
    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    63650234..63696686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024977189.2 → XP_024832957.1  ubiquitin-protein ligase E3B isoform X1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_005217808.5 → XP_005217865.1  ubiquitin-protein ligase E3B isoform X1

    See identical proteins and their annotated locations for XP_005217865.1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  3. XM_015475464.3 → XP_015330950.1  ubiquitin-protein ligase E3B isoform X1

    UniProtKB/TrEMBL
    E1BCU1
    Related
    ENSBTAP00000062126.1, ENSBTAT00000084286.2
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  4. XM_010813910.4 → XP_010812212.1  ubiquitin-protein ligase E3B isoform X1

    See identical proteins and their annotated locations for XP_010812212.1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  5. XM_010813908.4 → XP_010812210.1  ubiquitin-protein ligase E3B isoform X1

    See identical proteins and their annotated locations for XP_010812210.1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  6. XM_005217809.5 → XP_005217866.1  ubiquitin-protein ligase E3B isoform X1

    See identical proteins and their annotated locations for XP_005217866.1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  7. XM_024977188.2 → XP_024832956.1  ubiquitin-protein ligase E3B isoform X1

    UniProtKB/TrEMBL
    E1BCU1
    Conserved Domains (1) summary
    cd00078
    Location:682 → 1066
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  8. XM_059875965.1 → XP_059731948.1  ubiquitin-protein ligase E3B isoform X1

    UniProtKB/TrEMBL
    E1BCU1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.