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PBDC1 polysaccharide biosynthesis domain containing 1 [ Homo sapiens (human) ]

Gene ID: 51260, updated on 3-Jun-2018
Official Symbol
PBDC1provided by HGNC
Official Full Name
polysaccharide biosynthesis domain containing 1provided by HGNC
Primary source
HGNC:HGNC:28790
See related
Ensembl:ENSG00000102390 Vega:OTTHUMG00000021876
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf26
Expression
Ubiquitous expression in duodenum (RPKM 13.7), small intestine (RPKM 12.0) and 25 other tissues See more
Orthologs
See PBDC1 in Genome Data Viewer
Location:
Xq13.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) X NC_000023.11 (76172929..76178310)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (75392771..75398033)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 5A pseudogene Neighboring gene uncharacterized LOC107985665 Neighboring gene methylmalonic aciduria and homocystinuria, cblD type pseudogene Neighboring gene RNA, U6 small nuclear 867, pseudogene

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Homology

Clone Names

  • MGC874, 2610029G23Rik

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
protein PBDC1
Names
UPF0368 protein Cxorf26
polysaccharide biosynthesis domain-containing protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001300888.1NP_001287817.1  protein PBDC1 isoform 2

    See identical proteins and their annotated locations for NP_001287817.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 3' coding region which results in a frameshift compared to isoform 1. The encoded isoform (2) is shorter and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC233281, AI919559, BC001220, BM817702, CD704296, DB536944
    Consensus CDS
    CCDS75995.1
    UniProtKB/Swiss-Prot
    Q9BVG4
    UniProtKB/TrEMBL
    A6NDF3
    Related
    ENSP00000362455.3, OTTHUMP00000023586, ENST00000373357.3, OTTHUMT00000057295
    Conserved Domains (1) summary
    cl04661
    Location:35100
    Polysacc_synt_4; Polysaccharide biosynthesis
  2. NM_016500.4NP_057584.2  protein PBDC1 isoform 1

    See identical proteins and their annotated locations for NP_057584.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC233281, AI919559, AY927529, BC001220
    Consensus CDS
    CCDS14432.1
    UniProtKB/Swiss-Prot
    Q9BVG4
    Related
    ENSP00000362456.3, OTTHUMP00000023585, ENST00000373358.7
    Conserved Domains (1) summary
    pfam04669
    Location:35159
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p12 Primary Assembly

    Range
    76172929..76178310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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