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ANKRD39 ankyrin repeat domain 39 [ Homo sapiens (human) ]

Gene ID: 51239, updated on 11-Jun-2021

Summary

Official Symbol
ANKRD39provided by HGNC
Official Full Name
ankyrin repeat domain 39provided by HGNC
Primary source
HGNC:HGNC:28640
See related
Ensembl:ENSG00000213337
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 6.7), adrenal (RPKM 6.0) and 25 other tissues See more
Orthologs
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Genomic context

See ANKRD39 in Genome Data Viewer
Location:
2q11.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (96847990..96858016, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (97513727..97523753, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 23 Neighboring gene semaphorin 4C Neighboring gene family with sequence similarity 178 member B Neighboring gene uncharacterized LOC101927053

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC41816

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
contributes_to ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in protein K6-linked ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of BRCA1-BARD1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat domain-containing protein 39

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016466.6NP_057550.3  ankyrin repeat domain-containing protein 39

    See identical proteins and their annotated locations for NP_057550.3

    Status: VALIDATED

    Source sequence(s)
    BU626151, BX091421, DA769410
    Consensus CDS
    CCDS2028.1
    UniProtKB/Swiss-Prot
    Q53RE8
    Related
    ENSP00000377170.4, ENST00000393537.5
    Conserved Domains (3) summary
    sd00045
    Location:6494
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:3584
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:68152
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    96847990..96858016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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