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PBX3-DT PBX3 divergent transcript [ Homo sapiens (human) ]

Gene ID: 51145, updated on 13-May-2022

Summary

Official Symbol
PBX3-DTprovided by HGNC
Official Full Name
PBX3 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:24638
See related
AllianceGenome:HGNC:24638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.3), ovary (RPKM 0.2) and 1 other tissue See more
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Genomic context

See PBX3-DT in Genome Data Viewer
Location:
9q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (125743754..125745929, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (137943705..137945880, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (128506033..128508208, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MAPK associated protein 1 Neighboring gene U2 spliceosomal RNA Neighboring gene Sharpr-MPRA regulatory region 13831 Neighboring gene VISTA enhancer hs1030 Neighboring gene VISTA enhancer hs818 Neighboring gene PBX homeobox 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122032.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA397744, AA421133

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    125743754..125745929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    137943705..137945880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_016158.1: Suppressed sequence

    Description
    NM_016158.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.