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COL6A1 collagen type VI alpha 1 chain [ Bos taurus (cattle) ]

Gene ID: 511422, updated on 1-Jul-2020

Summary

Official Symbol
COL6A1provided by VGNC
Official Full Name
collagen type VI alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:27570
See related
BGD:BT10745; Ensembl:ENSBTAG00000011802
Gene type
protein coding
RefSeq status
INFERRED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See COL6A1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
35
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 1 NC_037328.1 (145668730..145687976)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 1 AC_000158.1 (147404396..147423644)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 3 Neighboring gene uncharacterized LOC107132220 Neighboring gene adiponectin receptor protein 1 pseudogene Neighboring gene collagen type VI alpha 2 chain Neighboring gene formimidoyltransferase cyclodeaminase

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
collagen alpha-1(VI) chain
Names
collagen, type VI, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143865.2NP_001137337.1  collagen alpha-1(VI) chain precursor

    See identical proteins and their annotated locations for NP_001137337.1

    Status: INFERRED

    Source sequence(s)
    NKLS02000001
    UniProtKB/TrEMBL
    E1BI98
    Related
    ENSBTAP00000015668.5, ENSBTAT00000015668.6
    Conserved Domains (2) summary
    pfam01391
    Location:272329
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:34227
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    145668730..145687976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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