U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase [ Bos taurus (cattle) ]

Gene ID: 511380, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ALKBH2provided by VGNC
Official Full Name
alkB homolog 2, alpha-ketoglutarate dependent dioxygenaseprovided by VGNC
Primary source
VGNC:VGNC:25833
See related
BGD:BT15831; Ensembl:ENSBTAG00000019846
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (63977745..63983575)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase beta Neighboring gene uracil DNA glycosylase Neighboring gene ubiquitin specific peptidase 30 Neighboring gene SV2 related protein Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene D-amino acid oxidase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC90512, MGC142387

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA oxidative demethylase ALKBH2
Names
alkB, alkylation repair homolog 2
alkylated DNA repair protein alkB homolog 2
alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
NP_001019687.1
XP_005217847.2
XP_005217848.2
XP_005217849.2
XP_005217851.2
XP_015330947.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024516.1 → NP_001019687.1  DNA oxidative demethylase ALKBH2

    See identical proteins and their annotated locations for NP_001019687.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021573
    UniProtKB/Swiss-Prot
    Q0VCG6, Q58DM4
    Related
    ENSBTAP00000026442.5, ENSBTAT00000026442.6
    Conserved Domains (1) summary
    pfam13532
    Location:71 → 253
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    63977745..63983575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005217791.5 → XP_005217848.2  DNA oxidative demethylase ALKBH2 isoform X1

    UniProtKB/Swiss-Prot
    Q0VCG6, Q58DM4
    Conserved Domains (1) summary
    pfam13532
    Location:71 → 253
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  2. XM_005217790.5 → XP_005217847.2  DNA oxidative demethylase ALKBH2 isoform X1

    UniProtKB/Swiss-Prot
    Q0VCG6, Q58DM4
    Conserved Domains (1) summary
    pfam13532
    Location:71 → 253
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  3. XM_015475461.3 → XP_015330947.2  DNA oxidative demethylase ALKBH2 isoform X2

    Related
    ENSBTAP00000080443.1, ENSBTAT00000117502.1

  4. XM_005217792.5 → XP_005217849.2  DNA oxidative demethylase ALKBH2 isoform X1

    UniProtKB/Swiss-Prot
    Q0VCG6, Q58DM4
    Conserved Domains (1) summary
    pfam13532
    Location:71 → 253
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily

  5. XM_005217794.5 → XP_005217851.2  DNA oxidative demethylase ALKBH2 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58DM4.1 GenPept UniProtKB/Swiss-Prot:Q58DM4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous