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UTP11 UTP11 small subunit processome component [ Homo sapiens (human) ]

Gene ID: 51118, updated on 1-Jun-2020

Summary

Official Symbol
UTP11provided by HGNC
Official Full Name
UTP11 small subunit processome componentprovided by HGNC
Primary source
HGNC:HGNC:24329
See related
Ensembl:ENSG00000183520 MIM:609440
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CGI94; CGI-94; UTP11L
Expression
Ubiquitous expression in adrenal (RPKM 11.3), esophagus (RPKM 10.1) and 25 other tissues See more
Orthologs

Genomic context

See UTP11 in Genome Data Viewer
Location:
1p34.3
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (38012716..38024820)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38478384..38490497)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 510, pseudogene Neighboring gene four and a half LIM domains 3 Neighboring gene Sharpr-MPRA regulatory region 3132 Neighboring gene POU class 3 homeobox 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA processing TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm TAS
Traceable Author Statement
more info
 
small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
probable U3 small nucleolar RNA-associated protein 11
Names
U3 snoRNA-associated protein 11
UTP11, small subunit processome component homolog
UTP11-like protein
UTP11-like, U3 small nucleolar ribonucleoprotein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016037.4NP_057121.2  probable U3 small nucleolar RNA-associated protein 11

    See identical proteins and their annotated locations for NP_057121.2

    Status: VALIDATED

    Source sequence(s)
    AF151852, BI493106, BU620078, BU940926, CX163866
    Consensus CDS
    CCDS429.1
    UniProtKB/Swiss-Prot
    Q9Y3A2
    Related
    ENSP00000362105.4, ENST00000373014.5
    Conserved Domains (1) summary
    pfam03998
    Location:13253
    Utp11; Utp11 protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    38012716..38024820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011541555.2XP_011539857.1  probable U3 small nucleolar RNA-associated protein 11 isoform X1

    See identical proteins and their annotated locations for XP_011539857.1

    Conserved Domains (1) summary
    pfam03998
    Location:1184
    Utp11; Utp11 protein
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