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SSUH2 ssu-2 homolog [ Homo sapiens (human) ]

Gene ID: 51066, updated on 23-Nov-2021

Summary

Official Symbol
SSUH2provided by HGNC
Official Full Name
ssu-2 homologprovided by HGNC
Primary source
HGNC:HGNC:24809
See related
Ensembl:ENSG00000125046 MIM:617479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SSU-2; fls485; C3orf32
Expression
Biased expression in testis (RPKM 1.1), small intestine (RPKM 0.7) and 8 other tissues See more
Orthologs
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Genomic context

See SSUH2 in Genome Data Viewer
Location:
3p25.3
Exon count:
32
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (8619386..8745035, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (8661089..8693770, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene LMCD1 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 2381 Neighboring gene LIM and cysteine rich domains 1 Neighboring gene uncharacterized LOC107986009 Neighboring gene long intergenic non-protein coding RNA 312 Neighboring gene Sharpr-MPRA regulatory region 1018 Neighboring gene olfactory receptor family 7 subfamily E member 122 pseudogene Neighboring gene caveolin 3 Neighboring gene uncharacterized LOC107986061 Neighboring gene oxytocin receptor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ35706, AC087859.1

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in odontogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein SSUH2 homolog
Names
protein ssu-2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256748.3NP_001243677.1  protein SSUH2 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC034187
    Consensus CDS
    CCDS58815.1
    UniProtKB/Swiss-Prot
    Q9Y2M2
    Related
    ENSP00000439378.1, ENST00000544814.6
    Conserved Domains (1) summary
    cd10719
    Location:177244
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  2. NM_001256749.3NP_001243678.1  protein SSUH2 homolog isoform 2

    See identical proteins and their annotated locations for NP_001243678.1

    Status: VALIDATED

    Source sequence(s)
    AC034187
    UniProtKB/Swiss-Prot
    Q9Y2M2
    Conserved Domains (1) summary
    COG0484
    Location:66173
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  3. NM_015931.4NP_057015.2  protein SSUH2 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC034187
    Consensus CDS
    CCDS2568.1
    Related
    ENSP00000339150.3, ENST00000341795.7
    Conserved Domains (1) summary
    COG0484
    Location:66173
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

RNA

  1. NR_046358.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC034187
    Related
    ENST00000413305.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    8619386..8745035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017006530.1XP_016862019.1  protein SSUH2 homolog isoform X10

  2. XM_017006531.1XP_016862020.1  protein SSUH2 homolog isoform X10

  3. XM_017006515.1XP_016862004.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  4. XM_017006523.1XP_016862012.1  protein SSUH2 homolog isoform X6

  5. XM_017006524.1XP_016862013.1  protein SSUH2 homolog isoform X7

  6. XM_017006522.1XP_016862011.1  protein SSUH2 homolog isoform X6

  7. XM_017006521.1XP_016862010.1  protein SSUH2 homolog isoform X6

  8. XM_017006514.1XP_016862003.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  9. XM_017006511.1XP_016862000.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  10. XM_017006538.1XP_016862027.1  protein SSUH2 homolog isoform X17

    UniProtKB/Swiss-Prot
    Q9Y2M2
    UniProtKB/TrEMBL
    A0A024R2D2
    Related
    ENSP00000324551.4, ENST00000317371.8
    Conserved Domains (1) summary
    cl21539
    Location:155222
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  11. XM_017006525.1XP_016862014.1  protein SSUH2 homolog isoform X8

  12. XM_017006527.1XP_016862016.1  protein SSUH2 homolog isoform X10

  13. XM_011533774.1XP_011532076.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  14. XM_017006534.1XP_016862023.1  protein SSUH2 homolog isoform X13

  15. XM_017006533.1XP_016862022.1  protein SSUH2 homolog isoform X12

  16. XM_017006518.1XP_016862007.1  protein SSUH2 homolog isoform X3

  17. XM_017006512.1XP_016862001.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  18. XM_017006513.1XP_016862002.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  19. XM_017006528.1XP_016862017.1  protein SSUH2 homolog isoform X10

  20. XM_017006526.1XP_016862015.1  protein SSUH2 homolog isoform X9

  21. XM_017006517.1XP_016862006.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  22. XM_017006520.1XP_016862009.1  protein SSUH2 homolog isoform X5

  23. XM_017006529.1XP_016862018.1  protein SSUH2 homolog isoform X10

  24. XM_017006510.1XP_016861999.1  protein SSUH2 homolog isoform X1

  25. XM_017006519.1XP_016862008.1  protein SSUH2 homolog isoform X4

  26. XM_017006540.1XP_016862029.1  protein SSUH2 homolog isoform X17

    UniProtKB/Swiss-Prot
    Q9Y2M2
    UniProtKB/TrEMBL
    A0A024R2D2
    Conserved Domains (1) summary
    cl21539
    Location:155222
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  27. XM_017006516.1XP_016862005.1  protein SSUH2 homolog isoform X2

    Conserved Domains (1) summary
    COG0484
    Location:322429
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
  28. XM_017006539.1XP_016862028.1  protein SSUH2 homolog isoform X17

    UniProtKB/Swiss-Prot
    Q9Y2M2
    UniProtKB/TrEMBL
    A0A024R2D2
    Related
    ENSP00000410757.1, ENST00000415132.5
    Conserved Domains (1) summary
    cl21539
    Location:155222
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  29. XM_017006542.1XP_016862031.1  protein SSUH2 homolog isoform X17

    UniProtKB/Swiss-Prot
    Q9Y2M2
    UniProtKB/TrEMBL
    A0A024R2D2
    Conserved Domains (1) summary
    cl21539
    Location:155222
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  30. XM_017006541.1XP_016862030.1  protein SSUH2 homolog isoform X17

    UniProtKB/Swiss-Prot
    Q9Y2M2
    UniProtKB/TrEMBL
    A0A024R2D2
    Conserved Domains (1) summary
    cl21539
    Location:155222
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
  31. XM_017006532.1XP_016862021.1  protein SSUH2 homolog isoform X11

  32. XM_017006535.1XP_016862024.1  protein SSUH2 homolog isoform X14

  33. XM_017006536.2XP_016862025.1  protein SSUH2 homolog isoform X15

  34. XM_017006537.1XP_016862026.1  protein SSUH2 homolog isoform X16

RNA

  1. XR_001740162.1 RNA Sequence

  2. XR_001740163.1 RNA Sequence

  3. XR_001740164.1 RNA Sequence

  4. XR_001740165.1 RNA Sequence

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