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RHO rhodopsin [ Bos taurus (cattle) ]

Gene ID: 509933, updated on 22-Sep-2022

Summary

Official Symbol
RHOprovided by VGNC
Official Full Name
rhodopsinprovided by VGNC
Primary source
VGNC:VGNC:33942
See related
BGD:BT14158; Ensembl:ENSBTAG00000001310
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See RHO in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 22 NC_037349.1 (56225120..56231448, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 22 AC_000179.1 (56867887..56872817, complement)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene plexin D1 Neighboring gene H1.8 linker histone Neighboring gene intraflagellar transport 122 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables 11-cis retinal binding IDA
Inferred from Direct Assay
more info
PubMed 
enables G protein-coupled photoreceptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables G-protein alpha-subunit binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables arrestin family protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables guanyl-nucleotide exchange factor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables opsin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in absorption of visible light IDA
Inferred from Direct Assay
more info
PubMed 
involved_in detection of temperature stimulus involved in thermoception IEA
Inferred from Electronic Annotation
more info
 
involved_in photoreceptor cell maintenance IEA
Inferred from Electronic Annotation
more info
 
involved_in phototransduction, visible light IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 
involved_in response to light stimulus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in retina development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 
involved_in rhodopsin mediated signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in thermotaxis IEA
Inferred from Electronic Annotation
more info
 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of G protein-coupled receptor complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi membrane TAS
Traceable Author Statement
more info
 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in outer membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in photoreceptor disc membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in photoreceptor disc membrane TAS
Traceable Author Statement
more info
 
located_in photoreceptor inner segment membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in photoreceptor outer segment membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in photoreceptor outer segment membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in rod photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 
located_in sperm head plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in sperm midpiece IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
rhodopsin
Names
rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014890.2NP_001014890.1  rhodopsin

    See identical proteins and their annotated locations for NP_001014890.1

    Status: VALIDATED

    Source sequence(s)
    DAAA02054571
    UniProtKB/Swiss-Prot
    P02699
    UniProtKB/TrEMBL
    A0A4W2GU91, A0A6P5DPM5
    Related
    ENSBTAP00000001730.5, ENSBTAT00000001730.6
    Conserved Domains (2) summary
    pfam10413
    Location:337
    Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
    cd15080
    Location:38317
    7tmA_MWS_opsin; medium wave-sensitive opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    56225120..56231448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)