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SNHG32 small nucleolar RNA host gene 32 [ Homo sapiens (human) ]

Gene ID: 50854, updated on 1-Jun-2020

Summary

Official Symbol
SNHG32provided by HGNC
Official Full Name
small nucleolar RNA host gene 32provided by HGNC
Primary source
HGNC:HGNC:19078
See related
Ensembl:ENSG00000204387 MIM:605447
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
G8; D6S57; C6orf48
Expression
Ubiquitous expression in ovary (RPKM 167.3), thyroid (RPKM 84.5) and 24 other tissues See more
Orthologs

Genomic context

See SNHG32 in Genome Data Viewer
Location:
6p21.33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (31834916..31839761)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (31802693..31807541)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene origin of replication in promoter of HSPA1A Neighboring gene heat shock protein family A (Hsp70) member 1A Neighboring gene heat shock protein family A (Hsp70) member 1B Neighboring gene small nucleolar RNA, C/D box 48 Neighboring gene small nucleolar RNA, C/D box 52 Neighboring gene neuraminidase 1 Neighboring gene solute carrier family 44 member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Common genetic variation and the control of HIV-1 in humans.
NHGRI GWA Catalog
Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • protein G8

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
    Related
    ENST00000648677.1
  2. NR_160946.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
    Related
    ENST00000375642.6
  3. NR_160947.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
  4. NR_160948.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
    Related
    ENST00000614363.4
  5. NR_160949.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
    Related
    ENST00000375638.7
  6. NR_160950.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
  7. NR_160951.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
  8. NR_160952.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762
    Related
    ENST00000375635.6
  9. NR_160953.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL671762

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    31834916..31839761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_167244.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    3167531..3172376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    3312163..3317005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_3

Genomic

  1. NT_167245.2 Reference GRCh38.p13 ALT_REF_LOCI_3

    Range
    3082695..3087539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p13 ALT_REF_LOCI_6

    Range
    3090756..3095597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001040437.2: Suppressed sequence

    Description
    NM_001040437.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001040438.2: Suppressed sequence

    Description
    NM_001040438.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001287482.1: Suppressed sequence

    Description
    NM_001287482.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_001287483.1: Suppressed sequence

    Description
    NM_001287483.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  5. NM_001287484.1: Suppressed sequence

    Description
    NM_001287484.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  6. NM_001287485.1: Suppressed sequence

    Description
    NM_001287485.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  7. NM_001287486.1: Suppressed sequence

    Description
    NM_001287486.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  8. NM_001287487.1: Suppressed sequence

    Description
    NM_001287487.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  9. NM_001287488.1: Suppressed sequence

    Description
    NM_001287488.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  10. NM_016947.1: Suppressed sequence

    Description
    NM_016947.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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