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TMEM198B transmembrane protein 198B [ Bos taurus (domestic cattle) ]

Gene ID: 507581, updated on 30-Jan-2025
Official Symbol
TMEM198Bprovided by VGNC
Official Full Name
transmembrane protein 198Bprovided by VGNC
Primary source
VGNC:VGNC:108951
See related
BGD:BT20390; EnsemblRapid:ENSBTAG00070014731
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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See TMEM198B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (57433435..57439020, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 11-like Neighboring gene matrix metallopeptidase 19 Neighboring gene DnaJ heat shock protein family (Hsp40) member C14 Neighboring gene ORMDL sphingolipid biosynthesis regulator 2

Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36,000 bovine ESTs. Takasuga A, et al. Nucleic Acids Res, 2001 Nov 15. PMID 11713328, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Clone Names

  • MGC142702

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC507581

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076813.2 → NP_001070281.2  uncharacterized protein LOC507581 isoform 1

    See identical proteins and their annotated locations for NP_001070281.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AV611218, BC123627, DV824450, EE385945
    UniProtKB/TrEMBL
    A0A3Q1MUF7
    Related
    ENSBTAP00070019658.1, ENSBTAT00070033321.1
    Conserved Domains (1) summary
    pfam13886
    Location:44 → 240
    DUF4203; Domain of unknown function (DUF4203)

  2. NM_001244170.1 → NP_001231099.1  uncharacterized protein LOC507581 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
    Source sequence(s)
    AV611218, BC123627, DV824450, EE385945
    UniProtKB/TrEMBL
    A0A3Q1MUF7
    Conserved Domains (1) summary
    pfam13886
    Location:44 → 228
    DUF4203; Domain of unknown function (DUF4203)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    57433435..57439020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206535.5 → XP_005206592.1  uncharacterized protein LOC507581 isoform X1

    See identical proteins and their annotated locations for XP_005206592.1

    UniProtKB/TrEMBL
    A0A3Q1MUF7, F1MXP0
    Conserved Domains (1) summary
    pfam13886
    Location:44 → 240
    DUF4203; Domain of unknown function (DUF4203)

  2. XM_010805140.4 → XP_010803442.1  uncharacterized protein LOC507581 isoform X3

    See identical proteins and their annotated locations for XP_010803442.1

    Conserved Domains (1) summary
    pfam13886
    Location:1 → 174
    DUF4203; Domain of unknown function (DUF4203)

  3. XM_005206536.5 → XP_005206593.1  uncharacterized protein LOC507581 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1MUF7
    Conserved Domains (1) summary
    pfam13886
    Location:44 → 228
    DUF4203; Domain of unknown function (DUF4203)

  4. XM_005206534.5 → XP_005206591.1  uncharacterized protein LOC507581 isoform X1

    See identical proteins and their annotated locations for XP_005206591.1

    UniProtKB/TrEMBL
    A0A3Q1MUF7, F1MXP0
    Conserved Domains (1) summary
    pfam13886
    Location:44 → 240
    DUF4203; Domain of unknown function (DUF4203)

  5. XM_059886216.1 → XP_059742199.1  uncharacterized protein LOC507581 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials