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RXRA retinoid X receptor alpha [ Bos taurus (domestic cattle) ]

Gene ID: 507554, updated on 30-Jan-2025
Official Symbol
RXRAprovided by VGNC
Official Full Name
retinoid X receptor alphaprovided by VGNC
Primary source
VGNC:VGNC:34230
See related
BGD:BT24313; EnsemblRapid:ENSBTAG00070010124
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (105021618..105114880)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346650 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized protein SPEM3-like Neighboring gene collagen type V alpha 1 chain

Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
retinoic acid receptor RXR-alpha
Names
retinoid X receptor alpha protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304343.1 → NP_001291272.1  retinoic acid receptor RXR-alpha

    Status: VALIDATED

    Source sequence(s)
    EE359308, EE361066, EE367105, EE372439, EV679703, EV744130, NKLS02000011
    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Related
    ENSBTAP00070013328.1, ENSBTAT00070022651.1
    Conserved Domains (3) summary
    cd06943
    Location:206 → 417
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:110 → 186
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 103
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    105021618..105114880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059891119.1 → XP_059747102.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  2. XM_024998426.2 → XP_024854194.1  retinoic acid receptor RXR-alpha isoform X2

    UniProtKB/TrEMBL
    A0AAA9SUG8, F1MX52
    Related
    ENSBTAP00070013369.1, ENSBTAT00070022756.1
    Conserved Domains (3) summary
    cd06943
    Location:234 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:138 → 214
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:18 → 131
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_059891122.1 → XP_059747105.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  4. XM_059891115.1 → XP_059747098.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  5. XM_059891123.1 → XP_059747106.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  6. XM_059891120.1 → XP_059747103.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  7. XM_005213506.5 → XP_005213563.1  retinoic acid receptor RXR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LTY3, A0AAA9TQQ3
    Related
    ENSBTAP00070013360.1, ENSBTAT00070022734.1
    Conserved Domains (3) summary
    cd06943
    Location:231 → 442
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:135 → 211
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:15 → 128
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  8. XM_024998424.2 → XP_024854192.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Conserved Domains (3) summary
    cd06943
    Location:206 → 417
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:110 → 186
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 103
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  9. XM_059891116.1 → XP_059747099.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Related
    ENSBTAP00070013353.1, ENSBTAT00070022718.1

  10. XM_059891121.1 → XP_059747104.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3

  11. XM_059891118.1 → XP_059747101.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Related
    ENSBTAP00070013347.1, ENSBTAT00070022708.1

  12. XM_024998425.2 → XP_024854193.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Related
    ENSBTAP00070013344.1, ENSBTAT00070022700.1
    Conserved Domains (3) summary
    cd06943
    Location:206 → 417
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:110 → 186
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:1 → 103
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  13. XM_059891117.1 → XP_059747100.1  retinoic acid receptor RXR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LTY3
    Related
    ENSBTAP00070013321.1, ENSBTAT00070022636.1
Nucleotide Protein Strain
Heading Accession and Version

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