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GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 [ Bos taurus (domestic cattle) ]

Gene ID: 506903, updated on 30-Jan-2025
Official Symbol
GALNT6provided by VGNC
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 6provided by VGNC
Primary source
VGNC:VGNC:29234
See related
BGD:BT11995; EnsemblRapid:ENSBTAG00070033158
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See GALNT6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (28411572..28453482)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B1-like Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 4 member 8 Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene chymotrypsin like elastase 1 Neighboring gene protein DBF4 homolog A-like Neighboring gene bridging integrator 2

Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6
Names
UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
galNAc-T6
polypeptide GalNAc transferase 6
pp-GaNTase 6
protein-UDP acetylgalactosaminyltransferase 6
NP_001015534.1
XP_005206329.1
XP_005206332.1
XP_010803252.1
XP_010803253.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015534.1 → NP_001015534.1  polypeptide N-acetylgalactosaminyltransferase 6

    See identical proteins and their annotated locations for NP_001015534.1

    Status: PROVISIONAL

    Source sequence(s)
    BT020728
    UniProtKB/Swiss-Prot
    Q5EA41
    Related
    ENSBTAP00070045571.1, ENSBTAT00070074832.1
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:180 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    28411572..28453482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206275.5 → XP_005206332.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_005206332.1

    UniProtKB/TrEMBL
    A6H6Z5, F1MVR6
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:180 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_010804951.3 → XP_010803253.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_010803253.1

    UniProtKB/TrEMBL
    A6H6Z5, F1MVR6
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:180 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_005206272.5 → XP_005206329.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_005206329.1

    UniProtKB/TrEMBL
    A6H6Z5, F1MVR6
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:180 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_010804950.4 → XP_010803252.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_010803252.1

    UniProtKB/TrEMBL
    A6H6Z5, F1MVR6
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:180 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5EA41.1 GenPept UniProtKB/Swiss-Prot:Q5EA41

Gene LinkOut

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