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CXCR6 C-X-C motif chemokine receptor 6 [ Bos taurus (domestic cattle) ]

Gene ID: 506807, updated on 30-Jan-2025
Official Symbol
CXCR6provided by VGNC
Official Full Name
C-X-C motif chemokine receptor 6provided by VGNC
Primary source
VGNC:VGNC:27858
See related
BGD:BT12082; EnsemblRapid:ENSBTAG00070025794
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CXCR6 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (53373617..53378958, complement)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein Nup88-like Neighboring gene FYVE and coiled-coil domain autophagy adaptor 1 Neighboring gene X-C motif chemokine receptor 1 Neighboring gene C-C motif chemokine receptor 9 Neighboring gene uncharacterized LOC132343543

Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. The bovine chemokine receptors and their mRNA abundance in mononuclear phagocytes. Widdison S, et al. BMC Genomics, 2010 Jul 19. PMID 20642824, Free PMC Article
  2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables C-C chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables C-X-C chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables coreceptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
C-X-C chemokine receptor type 6
Names
G protein-coupled receptor TYMSTR

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014859.1 → NP_001014859.1  C-X-C chemokine receptor type 6

    See identical proteins and their annotated locations for NP_001014859.1

    Status: PROVISIONAL

    Source sequence(s)
    BT020675
    UniProtKB/TrEMBL
    Q5EA94, Q5EAD7
    Related
    ENSBTAP00070034763.1, ENSBTAT00070058426.1
    Conserved Domains (1) summary
    cd15173
    Location:31 → 297
    7tmA_CXCR6; CXC chemokine receptor type 6, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    53373617..53378958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024982501.2 → XP_024838269.1  C-X-C chemokine receptor type 6 isoform X1

    UniProtKB/TrEMBL
    Q5EA94, Q5EAD7
    Related
    ENSBTAP00070034759.1, ENSBTAT00070058412.1
    Conserved Domains (1) summary
    cd15173
    Location:31 → 297
    7tmA_CXCR6; CXC chemokine receptor type 6, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein Strain
Heading Accession and Version

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