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BTBD9 BTB domain containing 9 [ Bos taurus (cattle) ]

Gene ID: 505504, updated on 4-Apr-2024

Summary

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Official Symbol
BTBD9provided by VGNC
Official Full Name
BTB domain containing 9provided by VGNC
Primary source
VGNC:VGNC:54397
See related
BGD:BT12777; Ensembl:ENSBTAG00000000529
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (12059842..12472842, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101908014 Neighboring gene zinc finger AN1-type containing 3 Neighboring gene uncharacterized LOC132343670 Neighboring gene SIN3-HDAC complex associated factor pseudogene Neighboring gene uncharacterized LOC112443768 Neighboring gene uncharacterized LOC132343605 Neighboring gene glyoxalase I Neighboring gene dynein axonemal heavy chain 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adult locomotory behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing protein 9
Names
BTB (POZ) domain containing 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128498.1 → NP_001121970.1  BTB/POZ domain-containing protein 9

    See identical proteins and their annotated locations for NP_001121970.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134567
    UniProtKB/Swiss-Prot
    A4IFG2
    Related
    ENSBTAP00000092423.1, ENSBTAT00000132303.1
    Conserved Domains (4) summary
    smart00225
    Location:37 → 137
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14822
    Location:137 → 196
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 134
    BTB; BTB/POZ domain
    pfam00754
    Location:292 → 405
    F5_F8_type_C; F5/8 type C domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    12059842..12472842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024983455.2 → XP_024839223.1  BTB/POZ domain-containing protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1NMD3
    Related
    ENSBTAP00000073745.1, ENSBTAT00000078052.2
    Conserved Domains (4) summary
    cd14822
    Location:137 → 196
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 137
    BTB; BTB/POZ domain
    pfam00754
    Location:524 → 621
    F5_F8_type_C; F5/8 type C domain
    cl23730
    Location:292 → 393
    F5_F8_type_C; F5/8 type C domain

  2. XM_024983458.2 → XP_024839226.1  BTB/POZ domain-containing protein 9 isoform X4

    UniProtKB/TrEMBL
    F1MS09
    Conserved Domains (3) summary
    cd14822
    Location:137 → 196
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 137
    BTB; BTB/POZ domain
    pfam00754
    Location:292 → 405
    F5_F8_type_C; F5/8 type C domain

  3. XM_024983456.2 → XP_024839224.1  BTB/POZ domain-containing protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1NMD3
    Conserved Domains (4) summary
    cd14822
    Location:137 → 196
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:33 → 137
    BTB; BTB/POZ domain
    pfam00754
    Location:524 → 621
    F5_F8_type_C; F5/8 type C domain
    cl23730
    Location:292 → 393
    F5_F8_type_C; F5/8 type C domain

  4. XM_059880244.1 → XP_059736227.1  BTB/POZ domain-containing protein 9 isoform X1

  5. XM_024983457.2 → XP_024839225.1  BTB/POZ domain-containing protein 9 isoform X3

    Conserved Domains (3) summary
    cd14822
    Location:155 → 214
    BACK_BTBD9_like; BACK-like Domain C-terminal to BTB in BTB/POZ domain-containing protein 9 and similar proteins
    pfam00651
    Location:51 → 155
    BTB; BTB/POZ domain
    pfam00754
    Location:310 → 423
    F5_F8_type_C; F5/8 type C domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4IFG2.2 GenPept UniProtKB/Swiss-Prot:A4IFG2

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