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Ubc ubiquitin C [ Rattus norvegicus (Norway rat) ]

Gene ID: 50522, updated on 4-Sep-2021

Summary

Official Symbol
Ubcprovided by RGD
Official Full Name
ubiquitin Cprovided by RGD
Primary source
RGD:621244
See related
Ensembl:ENSRNOG00000057823
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
may play a role in muscle protein catabolism [RGD, Feb 2006]
Expression
Biased expression in Muscle (RPKM 29445.0), Kidney (RPKM 24271.0) and 9 other tissues See more
Orthologs
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Genomic context

See Ubc in Genome Data Viewer
Location:
12q15
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (31238889..31243924)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (36638457..36642734)

Chromosome 12 - NC_051347.1Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene scavenger receptor class B, member 1 Neighboring gene uncharacterized LOC120095963

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protease binding IEA
Inferred from Electronic Annotation
more info
 
enables protease binding ISO
Inferred from Sequence Orthology
more info
 
enables protein tag IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017314.1NP_059010.1  polyubiquitin-C precursor

    See identical proteins and their annotated locations for NP_059010.1

    Status: PROVISIONAL

    Source sequence(s)
    D17296
    UniProtKB/Swiss-Prot
    Q63429
    Related
    ENSRNOP00000074688.1, ENSRNOT00000085692.1
    Conserved Domains (3) summary
    cd01803
    Location:77152
    Ubiquitin; Ubiquitin
    smart00213
    Location:172
    UBQ; Ubiquitin homologues
    cl00155
    Location:761789
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051347.1 Reference mRatBN7.2 Primary Assembly

    Range
    31238889..31243924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089711.1XP_038945639.1  polyubiquitin-C isoform X1

    Conserved Domains (2) summary
    cd01803
    Location:77152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    cl28922
    Location:913941
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
  2. XM_039089712.1XP_038945640.1  polyubiquitin-C isoform X1

    Conserved Domains (2) summary
    cd01803
    Location:77152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    cl28922
    Location:913941
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
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