U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

crabp2b cellular retinoic acid binding protein 2, b [ Danio rerio (zebrafish) ]

Gene ID: 503502, updated on 8-Dec-2022

Summary

Official Symbol
crabp2bprovided by ZNC
Official Full Name
cellular retinoic acid binding protein 2, bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-52
See related
Ensembl:ENSDARG00000030449 AllianceGenome:ZFIN:ZDB-GENE-050208-52
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7136989
Summary
Predicted to enable fatty acid binding activity and retinoic acid binding activity. Acts upstream of or within hindbrain morphogenesis and regulation of retinoic acid receptor signaling pathway. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including eye; neural keel; neural plate; optic vesicle; and pectoral fin. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See crabp2b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (8973042..8980033)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (9054117..9061108)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (9595523..9602569)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene circadian associated repressor of transcription a Neighboring gene mitochondrial ribosomal protein S21 Neighboring gene secretory carrier membrane protein 3 Neighboring gene ring finger protein 115b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables fatty acid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in fatty acid transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within hindbrain morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within regulation of retinoic acid receptor signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cellular retinoic acid-binding protein 2b
Names
cellular retinoic acid-binding protein 2b, duplicated

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320394.1NP_001307323.1  cellular retinoic acid-binding protein 2b

    Status: VALIDATED

    Source sequence(s)
    CU464180, CU466434
    UniProtKB/TrEMBL
    A0A8M1P8N3, Q5G9L7
    Related
    ENSDARP00000039596.5, ENSDART00000039597.6
    Conserved Domains (1) summary
    pfam00061
    Location:13146
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    8973042..8980033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)