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Tex11 testis expressed 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501588, updated on 2-Oct-2018

Summary

Official Symbol
Tex11provided by RGD
Official Full Name
testis expressed 11provided by RGD
Primary source
RGD:1560239
See related
Ensembl:ENSRNOG00000025672
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560239
Expression
Restricted expression toward (RPKM 25.9) See more
Orthologs

Genomic context

See Tex11 in Genome Data Viewer
Location:
Xq22
Exon count:
30
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (70670212..70946621, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (71541991..71810851, complement)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 2 Neighboring gene discs large MAGUK scaffold protein 3 Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit C homolog Neighboring gene solute carrier family 7 member 3 Neighboring gene sorting nexin 12 Neighboring gene uncharacterized LOC103690849

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
chiasma assembly ISO
Inferred from Sequence Orthology
more info
 
fertilization ISO
Inferred from Sequence Orthology
more info
 
male gonad development ISO
Inferred from Sequence Orthology
more info
 
male meiosis chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
male meiosis chromosome segregation ISO
Inferred from Sequence Orthology
more info
 
male meiotic nuclear division ISO
Inferred from Sequence Orthology
more info
 
meiotic gene conversion ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
reciprocal meiotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
reciprocal meiotic recombination ISO
Inferred from Sequence Orthology
more info
 
resolution of meiotic recombination intermediates ISO
Inferred from Sequence Orthology
more info
 
synaptonemal complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptonemal complex assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
central element IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
central element ISO
Inferred from Sequence Orthology
more info
 
condensed nuclear chromosome ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
colocalizes_with synaptonemal complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
testis-expressed sequence 11 protein; LOW QUALITY PROTEIN: testis-expressed sequence 11 protein
Names
testis expressed gene 11

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    70670212..70946621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008773302.2XP_008771524.1  LOW QUALITY PROTEIN: testis-expressed sequence 11 protein isoform X1

    See identical proteins and their annotated locations for XP_008771524.1

    Related
    ENSRNOP00000048393.5, ENSRNOT00000041731.6
    Conserved Domains (2) summary
    sd00006
    Location:403431
    TPR; TPR repeat [structural motif]
    pfam08631
    Location:176430
    SPO22; Meiosis protein SPO22/ZIP4 like

Alternate Rn_Celera

Genomic

  1. AC_000089.1 Alternate Rn_Celera

    Range
    66291197..66553544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001069708.6XP_001069708.4  testis-expressed sequence 11 protein isoform X2

    See identical proteins and their annotated locations for XP_001069708.4

    Conserved Domains (2) summary
    sd00006
    Location:403431
    TPR; TPR repeat [structural motif]
    pfam08631
    Location:176430
    SPO22; Meiosis protein SPO22/ZIP4 like
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