Cfap47 cilia and flagella associated protein 47 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Cfap47provided by RGD
Full Name: cilia and flagella associated protein 47provided by RGD
Primary source: RGD:1587070
See related: Ensembl:ENSRNOG00000030048 AllianceGenome:RGD:1587070
Gene type: protein coding
RefSeq status: MODEL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Chdc2; RGD1560207
Summary: Predicted to be involved in sperm axoneme assembly. Predicted to be located in sperm head-tail coupling apparatus. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 3. Orthologous to human CFAP47 (cilia and flagella associated protein 47). [provided by Alliance of Genome Resources, Jul 2025]
Expression: Biased expression in Lung (RPKM 42.4), Testes (RPKM 22.8) and 9 other tissues See more
Orthologs: all
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Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	X	NC_086039.1 (47149085..47504169, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	X	NC_051356.1 (43264687..43616607, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	X	NC_005120.4 (46791976..46903351, complement)

Chromosome X - NC_086039.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Submit: New GeneRIF Correction

Process	Evidence Code	Pubs
involved_in sperm axoneme assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cilium	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in sperm head-tail coupling apparatus	ISO Inferred from Sequence Orthology more info

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The following sections contain reference sequences that belong to a specific genome build. Explain

XM_063280369.1 → XP_063136439.1 cilia- and flagella-associated protein 47 isoform X2

UniProtKB/TrEMBL

A0ABK0LWY1
XM_063280368.1 → XP_063136438.1 cilia- and flagella-associated protein 47 isoform X1

UniProtKB/TrEMBL

A0A8I6AEH9, A0ABK0LWY1

Related

ENSRNOP00000090800.2, ENSRNOT00000115495.2
XM_063280371.1 → XP_063136441.1 cilia- and flagella-associated protein 47 isoform X4
XM_063280370.1 → XP_063136440.1 cilia- and flagella-associated protein 47 isoform X3