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Galnt4 polypeptide N-acetylgalactosaminyltransferase 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500826, updated on 21-Jul-2018

Summary

Official Symbol
Galnt4provided by RGD
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 4provided by RGD
Primary source
RGD:1564589
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 52.4), Liver (RPKM 49.4) and 9 other tissues See more
Orthologs

Genomic context

See Galnt4 in Genome Data Viewer
Location:
7q13
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (41305437..41309621)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (41341613..41347240)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553961 Neighboring gene uncharacterized LOC108351443 Neighboring gene POC1 centriolar protein B Neighboring gene uncharacterized LOC108351444 Neighboring gene dual specificity phosphatase 6

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC125173

Gene Ontology Provided by RGD

Component Evidence Code Pubs
colocalizes_with Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
polypeptide N-acetylgalactosaminyltransferase 4
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)
polypeptide GalNAc transferase-T4
NP_001020224.2
XP_006241359.1
XP_017450537.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025053.2NP_001020224.2  polypeptide N-acetylgalactosaminyltransferase 4

    See identical proteins and their annotated locations for NP_001020224.2

    Status: PROVISIONAL

    Source sequence(s)
    BC105818
    UniProtKB/TrEMBL
    Q3KR95
    Conserved Domains (4) summary
    cd02510
    Location:138432
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:133430
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:446576
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:446574
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    41305437..41309621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006241297.3XP_006241359.1  polypeptide N-acetylgalactosaminyltransferase 4 isoform X1

    See identical proteins and their annotated locations for XP_006241359.1

    UniProtKB/TrEMBL
    Q3KR95
    Conserved Domains (4) summary
    cd02510
    Location:138432
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:133430
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:446576
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:446574
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
  2. XM_017595048.1XP_017450537.1  polypeptide N-acetylgalactosaminyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    Q3KR95

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    30941312..30943853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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