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Gipc3 GIPC PDZ domain containing family, member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500789, updated on 21-Jul-2018

Summary

Official Symbol
Gipc3provided by RGD
Official Full Name
GIPC PDZ domain containing family, member 3provided by RGD
Primary source
RGD:1563255
See related
Ensembl:ENSRNOG00000020593
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563255
Expression
Biased expression in Heart (RPKM 6.3), Adrenal (RPKM 3.3) and 9 other tissues See more
Orthologs

Genomic context

See Gipc3 in Genome Data Viewer
Location:
7q11
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (11245160..11253080)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (11412757..11417446)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein LOC690617 Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene uncharacterized LOC102552827 Neighboring gene high mobility group 20 B Neighboring gene thromboxane A2 receptor Neighboring gene cactin, spliceosome C complex subunit Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 gamma

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
PDZ domain-containing protein GIPC3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109282.1NP_001102752.1  PDZ domain-containing protein GIPC3

    See identical proteins and their annotated locations for NP_001102752.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474029
    UniProtKB/TrEMBL
    D3ZEK6
    Related
    ENSRNOP00000027951.3, ENSRNOT00000027951.4
    Conserved Domains (1) summary
    cd00992
    Location:95168
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    11245160..11253080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017595042.1XP_017450531.1  PDZ domain-containing protein GIPC3 isoform X1

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    6565154..6569858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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