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SLC22A18AS solute carrier family 22 member 18 antisense [ Homo sapiens (human) ]

Gene ID: 5003, updated on 11-Jun-2021

Summary

Official Symbol
SLC22A18ASprovided by HGNC
Official Full Name
solute carrier family 22 member 18 antisenseprovided by HGNC
Primary source
HGNC:HGNC:10965
See related
Ensembl:ENSG00000254827 MIM:603240
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BWR1B; BWSCR1B; ORCTL2S; SLC22A1LS; p27-BWR1B
Expression
Broad expression in colon (RPKM 2.2), duodenum (RPKM 1.3) and 24 other tissues See more
Orthologs
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Genomic context

See SLC22A18AS in Genome Data Viewer
Location:
11p15.4
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (2887344..2903575, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (2908574..2924805, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene KCNQ1 downstream neighbor Neighboring gene cyclin dependent kinase inhibitor 1C Neighboring gene solute carrier family 22 member 18 Neighboring gene pleckstrin homology like domain family A member 2 Neighboring gene nucleosome assembly protein 1 like 4 Neighboring gene small nucleolar RNA, H/ACA box 54

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • Beckwith-Wiedemann region 1B
  • Beckwith-Wiedemann syndrome chromosome region 1, candidate b
  • beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein
  • organic cation transporter-like 2 antisense
  • organic cation transporter-like protein 2 antisense protein
  • p27-Beckwith-Wiedemann region 1 B
  • solute carrier family 22 (organic cation transporter), member 1-like antisense
  • solute carrier family 22 (organic cation transporter), member 18 antisense
  • solute carrier family 22 member 1-like antisense protein
  • solute carrier family 22 member 18 antisense protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013791
    Related
    ENST00000625099.4
  2. NR_169305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013791

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    2887344..2903575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187585.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    119555..135790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001302862.2: Suppressed sequence

    Description
    NM_001302862.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.
  2. NM_007105.4: Suppressed sequence

    Description
    NM_007105.4: This RefSeq was removed because currently there is support for the transcript but not for the protein.
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