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Tgif2 TGFB-induced factor homeobox 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499929, updated on 10-Oct-2019

Summary

Official Symbol
Tgif2provided by RGD
Official Full Name
TGFB-induced factor homeobox 2provided by RGD
Primary source
RGD:1560115
See related
Ensembl:ENSRNOG00000042374
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tgif2l1; RGD1560115; RGD1564927
Expression
Biased expression in Testes (RPKM 35.3), Adrenal (RPKM 28.6) and 9 other tissues See more
Orthologs

Genomic context

See Tgif2 in Genome Data Viewer
Location:
3q42
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (152906961..152924380)
106 current Rn_Celera (GCF_000002265.2) 3 AC_000071.1 (144050368..144065544)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (158772764..158788171, complement)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene myosin light chain 9 Neighboring gene uncharacterized LOC102551821 Neighboring gene RAB5 interacting factor Neighboring gene Src-like-adaptor 2 Neighboring gene uncharacterized LOC103691946

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC188777

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
PubMed 
nodal signaling pathway ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of neuron differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of gastrulation ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
retina development in camera-type eye ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
centrosome ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
homeobox protein TGIF2
Names
TGFB-induced factor homeobox 2-like 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134983.1NP_001128455.1  homeobox protein TGIF2

    See identical proteins and their annotated locations for NP_001128455.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168719
    UniProtKB/TrEMBL
    B5DEL6
    Related
    ENSRNOP00000059063.1, ENSRNOT00000066341.1
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    152906961..152924380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006235425.3XP_006235487.1  homeobox protein TGIF2 isoform X1

    See identical proteins and their annotated locations for XP_006235487.1

    UniProtKB/TrEMBL
    B5DEL6
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  2. XM_006235427.3XP_006235489.1  homeobox protein TGIF2 isoform X2

    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  3. XM_006235426.3XP_006235488.1  homeobox protein TGIF2 isoform X1

    See identical proteins and their annotated locations for XP_006235488.1

    UniProtKB/TrEMBL
    B5DEL6
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain
  4. XM_006235424.3XP_006235486.1  homeobox protein TGIF2 isoform X1

    See identical proteins and their annotated locations for XP_006235486.1

    UniProtKB/TrEMBL
    B5DEL6
    Conserved Domains (1) summary
    pfam05920
    Location:3675
    Homeobox_KN; Homeobox KN domain

Alternate Rn_Celera

Genomic

  1. AC_000071.1 Alternate Rn_Celera

    Range
    144050368..144065544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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