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Fam98b family with sequence similarity 98, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 499866, updated on 18-Apr-2019

Summary

Official Symbol
Fam98bprovided by RGD
Official Full Name
family with sequence similarity 98, member Bprovided by RGD
Primary source
RGD:1564603
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564603
Expression
Biased expression in Spleen (RPKM 25.5), Thymus (RPKM 25.2) and 9 other tissues See more
Orthologs

Genomic context

See Fam98b in Genome Data Viewer
Location:
3q35
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (108944094..108977480)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (115501086..115531871)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene sprouty-related, EVH1 domain containing 1 Neighboring gene alpha-enolase-like Neighboring gene microRNA 674 Neighboring gene RAS guanyl releasing protein 1 Neighboring gene uncharacterized LOC108350442

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
PubMed 
protein methyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
positive regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
PubMed 
protein methylation ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
tRNA-splicing ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA-splicing ligase complex ISO
Inferred from Sequence Orthology
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    108944094..108977480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234792.3XP_006234854.1  protein FAM98B isoform X1

    Conserved Domains (1) summary
    pfam10239
    Location:17300
    DUF2465; Protein of unknown function (DUF2465)

Alternate Rn_Celera

Genomic

  1. AC_000071.1 Alternate Rn_Celera

    Range
    103063719..103094105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006224645.3XP_006224707.1  protein FAM98B isoform X2

    Conserved Domains (1) summary
    pfam10239
    Location:17330
    DUF2465; Protein of unknown function (DUF2465)
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