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Bbln bublin coiled coil protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 499780, updated on 11-Apr-2024

Summary

Official Symbol
Bblnprovided by RGD
Official Full Name
bublin coiled coil proteinprovided by RGD
Primary source
RGD:1561113
See related
AllianceGenome:RGD:1561113
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561113
Summary
Orthologous to human BBLN (bublin coiled coil protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 217.3), Adrenal (RPKM 200.1) and 9 other tissues See more
Orthologs
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Genomic context

See Bbln in Genome Data Viewer
Location:
3p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (36072325..36075070, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (15674577..15677322, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (11408076..11410907, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene dynamin 1 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC134486070 Neighboring gene CDKN1A interacting zinc finger protein 1 Neighboring gene lipocalin 2 Neighboring gene uncharacterized LOC120101523 Neighboring gene prostaglandin E synthase 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in intermediate filament ISO
Inferred from Sequence Orthology
more info
 
located_in kinetochore microtubule ISO
Inferred from Sequence Orthology
more info
 
located_in subapical part of cell ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
bublin coiled-coil protein
Names
UPF0184 protein C9orf16 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399481.1NP_001386410.1  bublin coiled-coil protein

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    Conserved Domains (1) summary
    pfam03670
    Location:183
    UPF0184; Uncharacterized protein family (UPF0184)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    36072325..36075070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)