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Fbxo31 F-box protein 31 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498959, updated on 13-Aug-2019

Summary

Official Symbol
Fbxo31provided by RGD
Official Full Name
F-box protein 31provided by RGD
Primary source
RGD:1561069
See related
Ensembl:ENSRNOG00000042274
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561069
Expression
Biased expression in Muscle (RPKM 122.2), Heart (RPKM 64.6) and 9 other tissues See more
Orthologs

Genomic context

See Fbxo31 in Genome Data Viewer
Location:
19q12
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (53487610..53625673, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (64224819..64363108, complement)

Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene similar to RIKEN cDNA 6430548M08 Neighboring gene uncharacterized LOC108348955 Neighboring gene hypothetical protein LOC687560 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene microtubule-associated protein 1 light chain 3 beta

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC125122

Gene Ontology Provided by RGD

Function Evidence Code Pubs
cyclin binding IEA
Inferred from Electronic Annotation
more info
 
cyclin binding ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
anaphase-promoting complex-dependent catabolic process ISO
Inferred from Sequence Orthology
more info
PubMed 
anaphase-promoting complex-dependent catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
PubMed 
cellular response to DNA damage stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
mitotic G1 DNA damage checkpoint IEA
Inferred from Electronic Annotation
more info
 
mitotic G1 DNA damage checkpoint ISO
Inferred from Sequence Orthology
more info
PubMed 
mitotic G1 DNA damage checkpoint ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of dendrite morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 
SCF ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
PubMed 
SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
PubMed 
neuronal cell body ISS
Inferred from Sequence or Structural Similarity
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044259.2NP_001037724.2  F-box only protein 31

    See identical proteins and their annotated locations for NP_001037724.2

    Status: PROVISIONAL

    Source sequence(s)
    BC166840
    UniProtKB/Swiss-Prot
    B2RYN2
    Related
    ENSRNOP00000063581.2, ENSRNOT00000068764.3
    Conserved Domains (2) summary
    pfam12014
    Location:271329
    DUF3506; Domain of unknown function (DUF3506)
    pfam12937
    Location:6199
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

    Range
    53487610..53625673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006255720.3XP_006255782.1  F-box only protein 31 isoform X2

    Related
    ENSRNOP00000067191.1, ENSRNOT00000074005.3
    Conserved Domains (1) summary
    pfam12014
    Location:113171
    DUF3506; Domain of unknown function (DUF3506)
  2. XM_006255719.3XP_006255781.1  F-box only protein 31 isoform X1

    Conserved Domains (1) summary
    pfam12014
    Location:166224
    DUF3506; Domain of unknown function (DUF3506)

Alternate Rn_Celera

Genomic

  1. AC_000087.1 Alternate Rn_Celera

    Range
    48874360..48902812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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