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Marf1 Meiosis regulator and mRNA stability factor 1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 49895, updated on 26-Aug-2021

Summary

Official Symbol
Marf1provided by FlyBase
Official Full Name
Meiosis regulator and mRNA stability factor 1provided by FlyBase
Primary source
FLYBASE:FBgn0039972
Locus tag
Dmel_CG17018
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE40762; CG17018; CG17410; Dmel\CG17018; MARF1
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Genomic context

See Marf1 in Genome Data Viewer
Location:
40F7-40F7; 2-54 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (22308755..22368796)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (22308755..22368796)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Tif-IA Neighboring gene Ribosomal protein L21 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene long non-coding RNA:CR46268 Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein L5

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

mobile_element

  • Loc: 22311178-22311665 mobile_element_type = transposon:INE-1{}2128
  • Loc: 22314315-22314808 mobile_element_type = transposon:gypsy4{}2661
  • Loc: 22314971-22315275 mobile_element_type = transposon:INE-1{}2130
  • Loc: 22315673-22318155 mobile_element_type = transposon:frogger{}558
  • Loc: 22321993-22322176 mobile_element_type = transposon:INE-1{}2132
  • Loc: 22322856-22323070 mobile_element_type = transposon:gypsy6{}559
  • Loc: 22325984-22326373 mobile_element_type = transposon:INE-1{}2133
  • Loc: 22327585-22327681 mobile_element_type = transposon:Cr1a{}2556
  • Loc: 22329230-22337869 mobile_element_type = transposon:invader5{}1644
  • Loc: 22341330-22341383 mobile_element_type = transposon:diver2{}2646
  • Loc: 22342755-22342967 mobile_element_type = transposon:G4{}570
  • Loc: 22342974-22343153 mobile_element_type = transposon:Doc3{}Marf1[571]
  • Loc: 22346693-22348202 mobile_element_type = transposon:X{}572
  • Loc: 22352231-22352486 mobile_element_type = transposon:INE-1{}2149
  • Loc: 22353277-22353852 mobile_element_type = transposon:Cr1a{}2559
  • Loc: 22355883-22356416 mobile_element_type = transposon:Idefix{}2603

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables CCR4-NOT complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables CCR4-NOT complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables mRNA binding involved in posttranscriptional gene silencing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA binding involved in posttranscriptional gene silencing IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in peroxisome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
meiosis regulator and mRNA stability factor 1
Names
CG17018-PA
CG17018-PC
CG17018-PD
CG17018-PE
CG17018-PF
Marf1-PA
Marf1-PC
Marf1-PD
Marf1-PE
Marf1-PF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    22308755..22368796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001259203.2NP_001246132.1  meiosis regulator and mRNA stability factor 1, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246132.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W5Y4
    Related
    FBpp0297345, FBtr0306235
    Conserved Domains (3) summary
    cd08824
    Location:772839
    LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
    cl14879
    Location:527598
    LabA_like_C; C-terminal domain of LabA_like proteins
    cl17169
    Location:220304
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_165414.2NP_724393.2  meiosis regulator and mRNA stability factor 1, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724393.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KWH0
    Related
    FBpp0085310, FBtr0085957
    Conserved Domains (3) summary
    cd08824
    Location:794861
    LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
    cl14879
    Location:549620
    LabA_like_C; C-terminal domain of LabA_like proteins
    cl17169
    Location:242326
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_165415.2NP_724394.2  meiosis regulator and mRNA stability factor 1, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724394.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KWG9
    Related
    FBpp0085311, FBtr0085958
    Conserved Domains (3) summary
    cd08824
    Location:805872
    LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
    cl14879
    Location:560631
    LabA_like_C; C-terminal domain of LabA_like proteins
    cl17169
    Location:253337
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. NM_165413.2NP_724392.1  meiosis regulator and mRNA stability factor 1, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724392.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W5Y4
    Related
    FBpp0085309, FBtr0085956
    Conserved Domains (3) summary
    cd08824
    Location:772839
    LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
    cl14879
    Location:527598
    LabA_like_C; C-terminal domain of LabA_like proteins
    cl17169
    Location:220304
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. NM_001259204.1NP_001246133.1  meiosis regulator and mRNA stability factor 1, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246133.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KWG9
    Related
    FBpp0297346, FBtr0306236
    Conserved Domains (3) summary
    cd08824
    Location:805872
    LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
    cl14879
    Location:560631
    LabA_like_C; C-terminal domain of LabA_like proteins
    cl17169
    Location:253337
    RRM_SF; RNA recognition motif (RRM) superfamily
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