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Tubb2a tubulin, beta 2A class IIa [ Rattus norvegicus (Norway rat) ]

Gene ID: 498736, updated on 10-Oct-2019

Summary

Official Symbol
Tubb2aprovided by RGD
Official Full Name
tubulin, beta 2A class IIaprovided by RGD
Primary source
RGD:1588452
See related
Ensembl:ENSRNOG00000017558
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tubb2b
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Brain (RPKM 2534.4), Liver (RPKM 575.4) and 6 other tissues See more

Genomic context

See Tubb2a in Genome Data Viewer
Location:
17p12
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (31493145..31496827)
106 current Rn_Celera (GCF_000002265.2) 17 AC_000085.1 (30361117..30364988)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (33390589..33391837)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene tubulin, beta 2B class IIb Neighboring gene hypothetical LOC100364958 Neighboring gene tubulin beta-2A chain pseudogene Neighboring gene biphenyl hydrolase like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
GTPase activity IEA
Inferred from Electronic Annotation
more info
 
structural constituent of cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microtubule-based process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microtubule ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
tubulin beta-2A chain
Names
T beta-15
Tubulin beta-2B chain

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109119.1NP_001102589.1  tubulin beta-2A chain

    See identical proteins and their annotated locations for NP_001102589.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473977
    UniProtKB/Swiss-Prot
    P85108
    Related
    ENSRNOP00000023611.3, ENSRNOT00000023611.6
    Conserved Domains (1) summary
    PLN00220
    Location:1430
    PLN00220; tubulin beta chain; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    31493145..31496827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    30361117..30364988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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