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abfA alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger [ Aspergillus niger ]

Gene ID: 4978177, updated on 3-Apr-2024

Summary

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Gene symbol
abfA
Gene description
alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger
Locus tag
An01g00330
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus niger
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
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Genomic context

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Location:
chromosome: II, map: unlocalized, clone: An01
Exon count:
8

NT_166518.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Ala

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_166518.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger
XP_001388482.1
  • Catalytic activity: hydrolysis of terminal non-reducing alpha-l-arabinofuranoside residues in alpha-l-arabinosides.;
    Function: acts only on small linear 1,5-alpha-linked l-arabinofuranosyl oligosaccharide.;
    Gene-ID: abfA;arfA;awabfA;exoA;
    Pathway: involved in degradation of the plant cell wall polysaccharide l-arabinan.;
    See PMID 7764056;
    See PMID 8000538

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_166518.1 Reference assembly

    Range
    77956..80194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001388445.1 → XP_001388482.1  alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger [Aspergillus niger]

    See identical proteins and their annotated locations for XP_001388482.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A2Q7E0, P42254
    UniProtKB/TrEMBL
    A0A370C057, D6QST5, G3XTH2
    Conserved Domains (1) summary
    smart00813
    Location:452 → 620
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
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