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arntl.S aryl hydrocarbon receptor nuclear translocator like S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 497632, updated on 8-Apr-2017

Summary

Official Symbol
arntl.S
Official Full Name
aryl hydrocarbon receptor nuclear translocator like S homeolog
Primary source
Xenbase:XB-GENE-495459
Locus tag
XELAEV_18024559mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
BMAL1; arntl; xBmal1

Genomic context

See arntl.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (18490982..18522941, complement)

Chromosome 4S - NC_030731.1Genomic Context describing neighboring genes Neighboring gene importin 7 S homeolog Neighboring gene BTB (POZ) domain containing 10 S homeolog Neighboring gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 S homeolog Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030731.1 Chromosome 4S Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General protein information

Preferred Names
aryl hydrocarbon receptor nuclear translocator like S homeolog
Names
aryl hydrocarbon receptor nuclear translocator-like

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095555.1NP_001089024.1  aryl hydrocarbon receptor nuclear translocator like S homeolog

    See identical proteins and their annotated locations for NP_001089024.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078042
    UniProtKB/TrEMBL
    Q6AZG3
    Conserved Domains (5) summary
    smart00091
    Location:154213
    PAS; PAS domain
    cd00130
    Location:346441
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:79131
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:151258
    PAS; PAS fold
    pfam14598
    Location:344449
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030731.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    18490982..18522941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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