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aer61b glycosyltransferase aer61b [ Ciona intestinalis (vase tunicate) ]

Gene ID: 497240, updated on 21-Dec-2023

Summary

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Gene symbol
aer61b
Gene description
glycosyltransferase aer61b
See related
Ensembl:ENSCING00000008359
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See aer61b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 8 NC_020173.2 (5643147..5649906)

Chromosome 8 - NC_020173.2Genomic Context describing neighboring genes Neighboring gene tetraspanin-33-like Neighboring gene uncharacterized LOC113474469 Neighboring gene glycosyltransferase aer61 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing 5 Neighboring gene uncharacterized LOC100182590 Neighboring gene deoxyhypusine hydroxylase Neighboring gene peptide methionine sulfoxide reductase MsrB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020173.2 Chromosome 8 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-GlcNAcylation via threonine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycosyltransferase aer61b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032668.1 → NP_001027840.1  glycosyltransferase aer61b precursor

    Status: PROVISIONAL

    Source sequence(s)
    AJ868229
    UniProtKB/TrEMBL
    Q5NDL7
    Related
    ENSCINP00000017053, ENSCINT00000017053
    Conserved Domains (1) summary
    pfam04577
    Location:308 → 440
    DUF563; Protein of unknown function (DUF563)

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020173.2 Reference KH Primary Assembly

    Range
    5643147..5649906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026835340.1 → XP_026691141.1  glycosyltransferase aer61b isoform X1

    UniProtKB/TrEMBL
    F7AK09
    Conserved Domains (1) summary
    pfam04577
    Location:308 → 447
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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