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CLN6 CLN6 transmembrane ER protein [ Canis lupus familiaris (dog) ]

Gene ID: 497068, updated on 17-Aug-2024

Summary

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Official Symbol
CLN6provided by VGNC
Official Full Name
CLN6 transmembrane ER proteinprovided by VGNC
Primary source
VGNC:VGNC:39351
See related
Ensembl:ENSCAFG00845018935
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CLN6 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (32442020..32459741, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (32180849..32198636, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (32678083..32695922, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (32370298..32388114, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (32432245..32450063, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093358 Neighboring gene protein inhibitor of activated STAT 1 Neighboring gene calmodulin like 4 Neighboring gene fem-1 homolog B Neighboring gene integrin subunit alpha 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A missense mutation in canine CLN6 in an Australian shepherd with neuronal ceroid lipofuscinosis. Katz ML, et al. J Biomed Biotechnol, 2011. PMID 21234413, Free PMC Article
  2. Characterization of candidate genes for neuronal ceroid lipofuscinosis in dog. Drögemüller C, et al. J Hered, 2005. PMID 15958790

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The c.829T>C transition is a strong candidate for the causative mutation in this neuronal ceroid lipofuscinoses-affected dog.
    Title: A missense mutation in canine CLN6 in an Australian shepherd with neuronal ceroid lipofuscinosis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
ceroid-lipofuscinosis neuronal protein 6 homolog
Names
Protein CLN6
ceroid-lipofuscinosis, neuronal 6, late infantile

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    32442020..32459741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442766.1 → XP_038298694.1  ceroid-lipofuscinosis neuronal protein 6 homolog

    UniProtKB/Swiss-Prot
    Q5JZQ8
    UniProtKB/TrEMBL
    A0A8C0K289, A0A8C0N0W5
    Related
    ENSCAFP00845026347.1, ENSCAFT00845033654.1
    Conserved Domains (1) summary
    pfam15156
    Location:31 → 310
    CLN6; Ceroid-lipofuscinosis neuronal protein 6

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    32370298..32388114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517204.1 → XP_038373132.1  ceroid-lipofuscinosis neuronal protein 6 homolog

    Conserved Domains (1) summary
    pfam15156
    Location:31 → 310
    CLN6; Ceroid-lipofuscinosis neuronal protein 6

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    32432245..32450063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645151.1 → XP_038501079.1  ceroid-lipofuscinosis neuronal protein 6 homolog

    Conserved Domains (1) summary
    pfam15156
    Location:31 → 310
    CLN6; Ceroid-lipofuscinosis neuronal protein 6

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    32678083..32695922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580811.1 → XP_038436739.1  ceroid-lipofuscinosis neuronal protein 6 homolog

    UniProtKB/Swiss-Prot
    Q5JZQ8
    UniProtKB/TrEMBL
    A0A8C0K289, A0A8C0N0W5
    Conserved Domains (1) summary
    pfam15156
    Location:31 → 310
    CLN6; Ceroid-lipofuscinosis neuronal protein 6

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32180849..32198636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038461519.1 → XP_038317447.1  ceroid-lipofuscinosis neuronal protein 6 homolog

    UniProtKB/Swiss-Prot
    Q5JZQ8
    UniProtKB/TrEMBL
    A0A8C0K289, A0A8C0N0W5
    Conserved Domains (1) summary
    pfam15156
    Location:31 → 310
    CLN6; Ceroid-lipofuscinosis neuronal protein 6

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001011888.1: Suppressed sequence

    Description
    NM_001011888.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5JZQ8.1 GenPept UniProtKB/Swiss-Prot:Q5JZQ8

Gene LinkOut

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