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PSMA5 proteasome 20S subunit alpha 5 [ Sus scrofa (pig) ]

Gene ID: 497063, updated on 1-Mar-2025
Official Symbol
PSMA5provided by VGNC
Official Full Name
proteasome 20S subunit alpha 5provided by VGNC
Primary source
VGNC:VGNC:98838
See related
Ensembl:ENSSSCG00000006830 RGD:14081006
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 56.2), longissimus dorsi muscle (RPKM 51.9) and 8 other tissues See more
Orthologs
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Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (110695429..110717308)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (121153782..121168609) , (121219893..121225930)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260359 Neighboring gene synaptophysin like 2 Neighboring gene uncharacterized LOC102167065 Neighboring gene sortilin 1 Neighboring gene uncharacterized LOC110260358 Neighboring gene myosin binding protein H like

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017
Products Interactant Other Gene Complex Source Pubs Description
Preferred Names
proteasome subunit alpha type-5
Names
proteasome (prosome, macropain) subunit, alpha type, 5
proteasome subunit alpha 5
proteasome subunit type alpha 5
NP_001138373.1
XP_020944406.1
XP_020944407.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144901.1NP_001138373.1  proteasome subunit alpha type-5

    See identical proteins and their annotated locations for NP_001138373.1

    Status: PROVISIONAL

    Source sequence(s)
    BW981249
    UniProtKB/TrEMBL
    A0A480SCD0, A0A4X1TE96, A0A8D0NTD4, A0A8D1J091, F2Z5K2
    Related
    ENSSSCP00000007285.4, ENSSSCT00000007481.5
    Conserved Domains (1) summary
    cd03753
    Location:8220
    proteasome_alpha_type_5; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    110695429..110717308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088748.1XP_020944407.1  proteasome subunit alpha type-5 isoform X2

    UniProtKB/TrEMBL
    A0A8D2AAF3
    Conserved Domains (1) summary
    cl00467
    Location:1162
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
  2. XM_021088747.1XP_020944406.1  proteasome subunit alpha type-5 isoform X1

    UniProtKB/TrEMBL
    A0A8D0NTD4, A0A8D1SLU5
    Conserved Domains (1) summary
    cd03753
    Location:2211
    proteasome_alpha_type_5; proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on ...