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armc8 armadillo repeat containing 8 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496954, updated on 5-Mar-2024

Summary

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Official Symbol
armc8provided by Xenbase
Official Full Name
armadillo repeat containing 8provided by Xenbase
Primary source
Xenbase:XB-GENE-493289
See related
Ensembl:ENSXETG00000001081
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (56515832..56555804, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (50949259..50993394)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene potassium voltage-gated channel subfamily H member 8 Neighboring gene uncharacterized LOC116407518 Neighboring gene RAB5D, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
armadillo repeat-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011463.1 → NP_001011463.1  armadillo repeat-containing protein 8

    See identical proteins and their annotated locations for NP_001011463.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088583
    UniProtKB/TrEMBL
    Q5I090
    Conserved Domains (2) summary
    sd00043
    Location:57 → 90
    ARM; armadillo repeat [structural motif]
    cl25709
    Location:49 → 212
    Arm_3; Atypical Arm repeat

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    56515832..56555804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970372.3 → XP_012825826.1  armadillo repeat-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A6I8RWA4, A0A8J0SVI2
    Related
    ENSXETP00000086990.2, ENSXETT00000098488.2
    Conserved Domains (3) summary
    COG5064
    Location:64 → 227
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    COG5369
    Location:418 → 683
    COG5369; Uncharacterized conserved protein [Function unknown]
    sd00043
    Location:72 → 105
    ARM; armadillo repeat [structural motif]

  2. XM_012970371.3 → XP_012825825.1  armadillo repeat-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q5A2, A0A6I8R826
    Related
    ENSXETP00000064724.1, ENSXETT00000096028.2
    Conserved Domains (3) summary
    COG5064
    Location:64 → 227
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    COG5369
    Location:465 → 730
    COG5369; Uncharacterized conserved protein [Function unknown]
    sd00043
    Location:72 → 105
    ARM; armadillo repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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