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macrod1 MACRO domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496629, updated on 4-Nov-2024

Summary

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Official Symbol
macrod1provided by Xenbase
Official Full Name
MACRO domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-947080
See related
Ensembl:ENSXETG00000035769 AllianceGenome:Xenbase:XB-GENE-947080
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lrp16; d930010j01rik
Summary
Orthologous to human MACROD1 (mono-ADP ribosylhydrolase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See macrod1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (35686244..36019679)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (40392193..40747804)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene tRNA phosphotransferase 1 Neighboring gene FERM domain containing kindlin 3 Neighboring gene stress induced phosphoprotein 1 Neighboring gene fibronectin leucine rich transmembrane protein 1 Neighboring gene uncharacterized LOC100492571 Neighboring gene OTU deubiquitinase, ubiquitin aldehyde binding 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ADP-ribose glycohydrolase MACROD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    35686244..36019679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018093419.2 → XP_017948908.2  ADP-ribose glycohydrolase MACROD1 isoform X1

    UniProtKB/TrEMBL
    A0A803JYS8
    Related
    ENSXETP00000113178.1, ENSXETT00000122774.1
    Conserved Domains (1) summary
    cd02908
    Location:206 → 372
    Macro_OAADPr_deacetylase; macrodomain, O-acetyl-ADP-ribose (OAADPr) family

  2. XM_018093420.2 → XP_017948909.2  ADP-ribose glycohydrolase MACROD1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QVH8
    Related
    ENSXETP00000077450.2, ENSXETT00000092494.2
    Conserved Domains (1) summary
    cd02908
    Location:206 → 372
    Macro_OAADPr_deacetylase; macrodomain, O-acetyl-ADP-ribose (OAADPr) family
Nucleotide Protein Strain
Heading Accession and Version

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