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sema3f semaphorin 3F [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496575, updated on 20-Jun-2018

Summary

Official Symbol
sema3fprovided by Xenbase
Official Full Name
semaphorin 3Fprovided by Xenbase
Primary source
Xenbase:XB-GENE-940271
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sema4; semak; sema-iv
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See sema3f in Genome Data Viewer
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (116273575..116334467)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668239.1 (136687014..136747906, complement)

Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene macrophage stimulating 1 receptor Neighboring gene CaM kinase-like vesicle-associated Neighboring gene guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 Neighboring gene solute carrier family 38 member 3

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
semaphorin-3F
Names
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
sema iv

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011157.1NP_001011157.1  semaphorin-3F precursor

    See identical proteins and their annotated locations for NP_001011157.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084913
    UniProtKB/TrEMBL
    Q5U4Y0
    Conserved Domains (3) summary
    cd11254
    Location:47516
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:515541
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:581636
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    116273575..116334467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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