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cdc40 cell division cycle 40 homolog (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 494534, updated on 13-Jun-2020

Summary

Official Symbol
cdc40provided by ZNC
Official Full Name
cell division cycle 40 homolog (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-050116-3
See related
Ensembl:ENSDARG00000041226
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:86860
Orthologs

Genomic context

See cdc40 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (53368625..53401999)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (53563208..53596582)
103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (53718429..53751803)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 6 Neighboring gene WASP family member 1 Neighboring gene methyltransferase like 24 Neighboring gene apolipoprotein Bb, tandem duplicate 2

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pre-mRNA-processing factor 17
Names
DKEYP-88F5.4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009990.1NP_001009990.1  pre-mRNA-processing factor 17

    See identical proteins and their annotated locations for NP_001009990.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088381
    UniProtKB/TrEMBL
    Q5I0F8
    Related
    ENSDARP00000060431.5, ENSDART00000060432.6
    Conserved Domains (3) summary
    COG2319
    Location:276578
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:280578
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:291329
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    53368625..53401999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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