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fgf5 fibroblast growth factor 5 [ Danio rerio (zebrafish) ]

Gene ID: 494454, updated on 22-Nov-2020

Summary

Official Symbol
fgf5provided by ZNC
Official Full Name
fibroblast growth factor 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-050201-6
See related
Ensembl:ENSDARG00000035377
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs

Genomic context

See fgf5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (39537195..39556884)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (38937042..38956731)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (41143150..41162839)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ANTXR cell adhesion molecule 2a Neighboring gene PR domain containing 8b Neighboring gene cilia and flagella associated protein 299 Neighboring gene bone morphogenetic protein 3 Neighboring gene protein kinase cGMP-dependent 2

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
fibroblast growth factor receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fibroblast growth factor receptor binding IEA
Inferred from Electronic Annotation
more info
 
growth factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
growth factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
animal organ morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cranial ganglion development IMP
Inferred from Mutant Phenotype
more info
PubMed 
fibroblast growth factor receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009561.1NP_001009561.1  fibroblast growth factor 5 precursor

    See identical proteins and their annotated locations for NP_001009561.1

    Status: PROVISIONAL

    Source sequence(s)
    AB194699
    UniProtKB/TrEMBL
    Q5TLE2
    Related
    ENSDARP00000051255.3, ENSDART00000051256.4
    Conserved Domains (1) summary
    pfam00167
    Location:41170
    FGF; Fibroblast growth factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    39537195..39556884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394599.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    177619..196071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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