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SPANXN2 SPANX family member N2 [ Homo sapiens (human) ]

Gene ID: 494119, updated on 13-May-2022

Summary

Official Symbol
SPANXN2provided by HGNC
Official Full Name
SPANX family member N2provided by HGNC
Primary source
HGNC:HGNC:33175
See related
Ensembl:ENSG00000268988 MIM:300665; AllianceGenome:HGNC:33175
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT11.7; SPANX-N2
Expression
Restricted expression toward testis (RPKM 3.1) See more
Orthologs
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Genomic context

See SPANXN2 in Genome Data Viewer
Location:
Xq27.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (143711955..143720752, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (142016971..142025768, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (142795055..142803846, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SLIT and NTRK like family member 4 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 pseudogene 2 Neighboring gene ubiquitin conjugating enzyme E2 N like (gene/pseudogene) Neighboring gene ribonucleotide reductase M2 polypeptide pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
sperm protein associated with the nucleus on the X chromosome N2
Names
cancer/testis antigen family 11, member 7
nuclear-associated protein SPAN-Xn2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009615.3NP_001009615.1  sperm protein associated with the nucleus on the X chromosome N2

    See identical proteins and their annotated locations for NP_001009615.1

    Status: VALIDATED

    Source sequence(s)
    AC239921, AL500522
    Consensus CDS
    CCDS35419.1
    UniProtKB/Swiss-Prot
    Q5MJ10
    Related
    ENSP00000470584.1, ENST00000598475.1
    Conserved Domains (2) summary
    pfam06957
    Location:81166
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    pfam07458
    Location:195
    SPAN-X; Sperm protein associated with nucleus, mapped to X chromosome

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    143711955..143720752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791819.1 Reference GRCh38.p14 PATCHES

    Range
    5667..5828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    142016971..142025768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)