Format

Send to:

Choose Destination

MSH2 mutS homolog 2 [ Canis lupus familiaris (dog) ]

Gene ID: 494002, updated on 12-Jan-2021

Summary

Official Symbol
MSH2provided by VGNC
Official Full Name
mutS homolog 2provided by VGNC
Primary source
VGNC:VGNC:43438
See related
Ensembl:ENSCAFG00000002659
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
NEW
Try the new Data Table view

Genomic context

See MSH2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (50390734..50467292)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (49372675..49449176)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (50572222..50649102)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (50098560..50174750)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (50386621..50461201)
105 previous assembly CanFam3.1 (GCF_000002285.3) 10 NC_006592.3 (49517448..49594001)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene neural Wiskott-Aldrich syndrome protein-like Neighboring gene epithelial cell adhesion molecule Neighboring gene potassium two pore domain channel subfamily K member 12 Neighboring gene U5 spliceosomal RNA Neighboring gene uncharacterized LOC106559417 Neighboring gene 60S ribosomal protein L39

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
DNA mismatch repair protein Msh2
Names
mutS homolog 2, colon cancer, nonpolyposis type 1
mutS-like protein 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Data Table view

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    50390734..50467292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680513.1XP_038536441.1  DNA mismatch repair protein Msh2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    50098560..50174750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489230.1XP_038345158.1  DNA mismatch repair protein Msh2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    50386621..50461201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615130.1XP_038471058.1  DNA mismatch repair protein Msh2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    50572222..50649102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551233.1XP_038407161.1  DNA mismatch repair protein Msh2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49372675..49449176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538482.6XP_538482.2  DNA mismatch repair protein Msh2

    UniProtKB/TrEMBL
    F1PM37
    Related
    ENSCAFP00000003876.3
    Conserved Domains (6) summary
    cd03285
    Location:633852
    ABC_MSH2_euk; ATP-binding cassette domain of eukaryotic MutS2 homolog
    COG0249
    Location:23853
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam01624
    Location:18132
    MutS_I; MutS domain I
    pfam05188
    Location:158284
    MutS_II; MutS domain II
    pfam05190
    Location:473569
    MutS_IV; MutS family domain IV
    pfam05192
    Location:305423
    MutS_III; MutS domain III
Support Center