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RABGEF1P1 RABGEF1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 493754, updated on 25-Oct-2022

Summary

Official Symbol
RABGEF1P1provided by HGNC
Official Full Name
RABGEF1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:55751
See related
Ensembl:ENSG00000291136 AllianceGenome:HGNC:55751
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-124K5.11
Expression
Ubiquitous expression in testis (RPKM 6.5), fat (RPKM 6.0) and 25 other tissues See more
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Genomic context

See RABGEF1P1 in Genome Data Viewer
Location:
7q11.21
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (66530305..66592407, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (67749968..67812058, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65995292..66057394, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3011 Neighboring gene G protein subunit alpha 11 pseudogene Neighboring gene GTF2I repeat domain containing 1 pseudogene Neighboring gene suppressor APC domain containing 2 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 7945 Neighboring gene ribosomal protein L35 pseudogene 5 Neighboring gene potassium channel tetramerization domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111972.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains two alternate internal exons, compared to variant 1.
    Source sequence(s)
    AA019315, BC103766, DA081109
  2. NR_111973.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains multiple alternate exons in the 5' and 3' regions, compared to variant 1.
    Source sequence(s)
    AK296922, AK310548, AL046745, BC103766, BM687536, BU727812, DA081109
    Related
    ENST00000686269.2
  3. NR_111974.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript.
    Source sequence(s)
    AA019315, BC103766, DA081109
  4. NR_111975.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AA019315, BC103766, DA081109
  5. NR_111976.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AA019315, BC103766, DA081109
  6. NR_111977.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) contains three alternate internal exons, compared to variant 1.
    Source sequence(s)
    AA019315, BC057835, BC103766, DA081109
  7. NR_111978.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) contains two alternate internal exons, compared to variant 1.
    Source sequence(s)
    AA019315, BC080520, BC103766, DA081109
  8. NR_111979.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) contains an alternate internal exon, compared to variant 1.
    Source sequence(s)
    AA019315, BC080520, BC103766, DA081109
    Related
    ENST00000638711.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    66530305..66592407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    67749968..67812058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_002933.1: Suppressed sequence

    Description
    NR_002933.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.