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MMP13 matrix metallopeptidase 13 [ Felis catus (domestic cat) ]

Gene ID: 493679, updated on 5-Mar-2024

Summary

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Official Symbol
MMP13
Official Full Name
matrix metallopeptidase 13
Primary source
VGNC:VGNC:68281
See related
EnsemblRapid:ENSFCTG00005016952
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: D1
Exon count:
10
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D1 NC_058377.1 (1513316..1527589, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D1 NC_018732.3 (1510180..1523789, complement)

Chromosome D1 - NC_058377.1Genomic Context describing neighboring genes Neighboring gene stromelysin-1 Neighboring gene matrix metallopeptidase 12 Neighboring gene defective in cullin neddylation 1 domain containing 5 Neighboring gene uncharacterized LOC123380307 Neighboring gene uncharacterized LOC123380309

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of matrix metalloproteinases in feline vaccine site-associated sarcomas. Sorensen KC, et al. Am J Vet Res, 2004 Mar. PMID 15027688

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagenase 3
Names
matrix metalloproteinase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058377.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    1513316..1527589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023239043.2 → XP_023094811.2  collagenase 3

    UniProtKB/TrEMBL
    M3VU49
    Related
    ENSFCTP00005035247.1, ENSFCTT00005048709.1
    Conserved Domains (2) summary
    cd00094
    Location:280 → 470
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:111 → 266
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
Nucleotide Protein
Heading Accession and Version

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