csf1r colony stimulating factor 1 receptor [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: csf1rprovided by Xenbase
Official Full Name: colony stimulating factor 1 receptorprovided by Xenbase
Primary source: Xenbase:XB-GENE-6257851
See related: Ensembl:ENSXETG00000011887
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: fms; c-fms; cd115; csf-1r
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	3	NC_030679.2 (21274861..21316181)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	3	NC_030679.1 (7190469..7231849, complement)

Chromosome 3 - NC_030679.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables cytokine binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables protein kinase activity	IEA Inferred from Electronic Annotation more info
enables protein tyrosine kinase activity	IEA Inferred from Electronic Annotation more info
enables transmembrane receptor protein tyrosine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytokine-mediated signaling pathway	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transmembrane receptor protein tyrosine kinase signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: macrophage colony-stimulating factor 1 receptor

NP_001008181.1

EC 2.7.10.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008180.1 → NP_001008181.1 macrophage colony-stimulating factor 1 receptor precursor

See identical proteins and their annotated locations for NP_001008181.1

Status: PROVISIONAL

Source sequence(s)

BC082504

UniProtKB/TrEMBL

A0A6I8QKE8, F6Z3F8, Q640T5

Related

ENSXETP00000025985.5, ENSXETT00000025985.5

Conserved Domains (5) summary

smart00409
Location:27 → 100

IG; Immunoglobulin

smart00410
Location:114 → 192

IG_like; Immunoglobulin like

pfam13927
Location:200 → 275

Ig_3; Immunoglobulin domain

cl11960
Location:298 → 397

Ig; Immunoglobulin domain

cl21453
Location:523 → 897

PKc_like; Protein Kinases, catalytic domain