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CNBA5310 hypothetical protein [ Cryptococcus neoformans var. neoformans B-3501A ]

Gene ID: 4933794, updated on 27-Aug-2016
Gene symbol
CNBA5310
Gene description
hypothetical protein
Locus tag
CNBA5310
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. neoformans B-3501A (strain: B-3501A, variety: neoformans, serotype: D)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_009177.1 (1464002..1467292)

Chromosome 1 - NC_009177.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
hypothetical protein
XP_777834.1
  • HMMPfam hit to DNA_ligase_A_C, ATP dependent DNA ligase C terminal region, score: 58.0, E(): 2.6e-14; HMMPfam hit to DNA_ligase_A_M, ATP dependent DNA ligase domain, score: 117.8, E(): 2.5e-32; HMMPfam hit to DNA_ligase_A_N, DNA ligase N terminus, score: 194.2, E(): 2.6e-55

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009177.1 Reference assembly

    Range
    1464002..1467292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_772741.1XP_777834.1  hypothetical protein CNBA5310 [Cryptococcus neoformans var. neoformans B-3501A]

    See identical proteins and their annotated locations for XP_777834.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F5HGK7
    Conserved Domains (5) summary
    cd07969
    Location:783933
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:462778
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:92934
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:201371
    DNA_ligase_A_N; DNA ligase N terminus
    pfam15557
    Location:25110
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA
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