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dctpp1 dCTP pyrophosphatase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493314, updated on 5-Mar-2024

Summary

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Official Symbol
dctpp1provided by Xenbase
Official Full Name
dCTP pyrophosphatase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-958670
See related
Ensembl:ENSXETG00000049214
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xtp3tpa
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (13627853..13631888)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (7967902..7971965)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene myosin light chain 11 Neighboring gene quinolinate phosphoribosyltransferase Neighboring gene integrin subunit alpha L Neighboring gene coiled-coil domain-containing protein 42-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis. Fierro AC, et al. BMC Genomics, 2007 May 16. PMID 17506875, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89294

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dCTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA protection IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within dCTP catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nucleoside triphosphate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dCTP pyrophosphatase 1
NP_001007937.2
XP_012825777.2
XP_012825779.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007936.2 → NP_001007937.2  dCTP pyrophosphatase 1

    Status: VALIDATED

    Source sequence(s)
    AL853805, AL861133, CN113766, DN065473
    UniProtKB/TrEMBL
    A0A803JD01, A0A8J0PEH5
    Related
    ENSXETP00000105741.1, ENSXETT00000107121.1
    Conserved Domains (1) summary
    cd11537
    Location:34 → 124
    NTP-PPase_RS21-C6_like; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    13627853..13631888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970323.3 → XP_012825777.2  dCTP pyrophosphatase 1 isoform X1

    UniProtKB/TrEMBL
    A0A803JD01, A0A8J0SNB7
    Conserved Domains (1) summary
    cd11537
    Location:40 → 130
    NTP-PPase_RS21-C6_like; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs

  2. XM_012970325.3 → XP_012825779.1  dCTP pyrophosphatase 1 isoform X2

    See identical proteins and their annotated locations for XP_012825779.1

    UniProtKB/TrEMBL
    A0A803JD01, Q66KE0
    Conserved Domains (1) summary
    cd11537
    Location:5 → 95
    NTP-PPase_RS21-C6_like; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs
Nucleotide Protein Strain
Heading Accession and Version

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