Format

Send to:

Choose Destination

snapc5 small nuclear RNA activating complex, polypeptide 5 [ Danio rerio (zebrafish) ]

Gene ID: 492409, updated on 14-Feb-2019

Summary

Official Symbol
snapc5provided by ZNC
Official Full Name
small nuclear RNA activating complex, polypeptide 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-50
See related
Ensembl:ENSDARG00000062476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
im:7138573; si:rp71-14b1.2
Orthologs

Genomic context

See snapc5 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (19487306..19491080, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (19498240..19502014, complement)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (19268017..19271791, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene zwilch kinetochore protein Neighboring gene ribosomal protein L4 Neighboring gene lactase-like b Neighboring gene SMAD family member 6b Neighboring gene SMAD family member 3b

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
transcription initiation from RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
snRNA-activating protein complex subunit 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080163.2NP_001073632.1  snRNA-activating protein complex subunit 5

    See identical proteins and their annotated locations for NP_001073632.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133151
    UniProtKB/TrEMBL
    Q1LXI0
    Related
    ENSDARP00000084846.4, ENSDART00000090413.5
    Conserved Domains (1) summary
    pfam15497
    Location:876
    SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    19487306..19491080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159085.4XP_005159142.1  snRNA-activating protein complex subunit 5 isoform X1

    See identical proteins and their annotated locations for XP_005159142.1

    UniProtKB/TrEMBL
    Q1LXI0
    Conserved Domains (1) summary
    pfam15497
    Location:876
    SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19
Support Center