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ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 [ Danio rerio (zebrafish) ]

Gene ID: 492353, updated on 2-Oct-2018

Summary

Official Symbol
ddx11provided by ZNC
Official Full Name
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-191
See related
Ensembl:ENSDARG00000011072 Vega:OTTDARG00000032409
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fa08b08; zgc:92172; wu:fa08b08
Orthologs

Genomic context

See ddx11 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
26
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (6502441..6534516, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (6362076..6394151, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene IQ motif and Sec7 domain 3b Neighboring gene WAS protein family homolog 1 Neighboring gene FK506 binding protein 4 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 3b

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent DNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP-dependent DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent helicase activity IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
helicase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 
iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA duplex unwinding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA repair IEA
Inferred from Electronic Annotation
more info
 
DNA replication IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
establishment of sister chromatid cohesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 
nucleolar chromatin organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription of nucleolar large rRNA by RNA polymerase I IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 
midbody IEA
Inferred from Electronic Annotation
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
spindle pole IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ATP-dependent DNA helicase DDX11
Names
DEAD/H-box protein 11
probable ATP-dependent DNA helicase DDX11
NP_001007320.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007319.1NP_001007320.1  ATP-dependent DNA helicase DDX11

    See identical proteins and their annotated locations for NP_001007320.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085645
    UniProtKB/Swiss-Prot
    F1R345
    Related
    ENSDARP00000025514.7, OTTDARP00000035773, ENSDART00000009217.8, OTTDART00000045269
    Conserved Domains (3) summary
    TIGR00604
    Location:205877
    rad3; DNA repair helicase (rad3)
    pfam13307
    Location:675863
    Helicase_C_2; Helicase C-terminal domain
    cl21455
    Location:8416
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    6502441..6534516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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