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PBDC1 polysaccharide biosynthesis domain containing 1 [ Canis lupus familiaris (dog) ]

Gene ID: 491969, updated on 12-Jan-2021

Summary

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Gene symbol
PBDC1
Gene description
polysaccharide biosynthesis domain containing 1
See related
Ensembl:ENSCAFG00000017228
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PBDC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (60302358..60308150)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (50143489..50149279)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (59208462..59214254)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (57995612..58001403)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (59609520..59615316)
105 previous assembly CanFam3.1 (GCF_000002285.3) X NC_006621.3 (59068733..59073085)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119868459 Neighboring gene MAGE family member E2 Neighboring gene uncharacterized LOC119868208 Neighboring gene tropomyosin alpha-1 chain-like Neighboring gene stomatin-like protein 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein PBDC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    60302358..60308150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038450329.1 → XP_038306257.1  protein PBDC1 isoform X1

  2. XM_038450330.1 → XP_038306258.1  protein PBDC1 isoform X2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    57995612..58001403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038523790.1 → XP_038379718.1  protein PBDC1 isoform X1

  2. XM_038523791.1 → XP_038379719.1  protein PBDC1 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    59609520..59615316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038652280.1 → XP_038508208.1  protein PBDC1 isoform X1

  2. XM_038652281.1 → XP_038508209.1  protein PBDC1 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    59208462..59214254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038587754.1 → XP_038443682.1  protein PBDC1 isoform X1

  2. XM_038587755.1 → XP_038443683.1  protein PBDC1 isoform X2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    50143489..50149279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_549089.6 → XP_549089.3  protein PBDC1 isoform X1

  2. XM_005641513.4 → XP_005641570.2  protein PBDC1 isoform X2

Nucleotide Protein
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