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LAMC3 laminin subunit gamma 3 [ Canis lupus familiaris (dog) ]

Gene ID: 491290, updated on 5-Mar-2024

Summary

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Official Symbol
LAMC3provided by VGNC
Official Full Name
laminin subunit gamma 3provided by VGNC
Primary source
VGNC:VGNC:42573
See related
Ensembl:ENSCAFG00845020359
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (53871275..53929956, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (52170894..52229552, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (53062336..53121064, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (52648766..52707409, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (52969239..53027948, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 214 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119873356 Neighboring gene allograft inflammatory factor 1 like Neighboring gene fibrinogen C domain containing 1 Neighboring gene pyroglutamylated RFamide peptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
laminin subunit gamma-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    53871275..53929956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038678266.1 → XP_038534194.1  laminin subunit gamma-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0N6B3, A0A8I3PD32, A0A8P0NRR8
    Related
    ENSCAFP00845028077.1, ENSCAFT00845035884.1
    Conserved Domains (7) summary
    COG5281
    Location:1090 → 1519
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd00055
    Location:866 → 916
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00185
    Location:725 → 775
    TNFRSF; CRD3 [structural motif]
    pfam00052
    Location:540 → 672
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:918 → 966
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:37 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22855
    Location:682 → 810
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_038678265.1 → XP_038534193.1  laminin subunit gamma-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6B3
    Conserved Domains (8) summary
    COG4942
    Location:1379 → 1584
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    COG5281
    Location:1090 → 1529
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd00055
    Location:866 → 916
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00185
    Location:725 → 775
    TNFRSF; CRD3 [structural motif]
    pfam00052
    Location:540 → 672
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:918 → 966
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:37 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22855
    Location:682 → 810
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    52648766..52707409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038487121.1 → XP_038343049.1  laminin subunit gamma-3 isoform X4

  2. XM_038487120.1 → XP_038343048.1  laminin subunit gamma-3 isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    52969239..53027948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038612967.1 → XP_038468895.1  laminin subunit gamma-3 isoform X2

  2. XM_038612966.1 → XP_038468894.1  laminin subunit gamma-3 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    53062336..53121064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038549008.1 → XP_038404936.1  laminin subunit gamma-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0N6B3

  2. XM_038549007.1 → XP_038404935.1  laminin subunit gamma-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6B3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52170894..52229552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014116995.3 → XP_013972470.2  laminin subunit gamma-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0N6B3, A0A8I3PD32, A0A8P0NRR8
    Conserved Domains (7) summary
    COG5281
    Location:1090 → 1519
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd00055
    Location:866 → 916
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00185
    Location:725 → 775
    TNFRSF; CRD3 [structural motif]
    pfam00052
    Location:540 → 672
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:918 → 966
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:37 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22855
    Location:682 → 810
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_014116994.3 → XP_013972469.2  laminin subunit gamma-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0N6B3
    Conserved Domains (8) summary
    COG4942
    Location:1379 → 1584
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    COG5281
    Location:1090 → 1529
    COG5281; Phage-related minor tail protein [Mobilome: prophages, transposons]
    cd00055
    Location:866 → 916
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00185
    Location:725 → 775
    TNFRSF; CRD3 [structural motif]
    pfam00052
    Location:540 → 672
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:918 → 966
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:37 → 269
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22855
    Location:682 → 810
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
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